Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | MPG28_RS00275 | Genome accession | NZ_CP094135 |
| Coordinates | 61925..62500 (+) | Length | 191 a.a. |
| NCBI ID | WP_245078368.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe040 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 56925..67500
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG28_RS00250 (MPG28_00250) | uvrD | 57616..59661 (+) | 2046 | WP_245078360.1 | DNA helicase UvrD | - |
| MPG28_RS00255 (MPG28_00255) | flgA | 59658..60314 (+) | 657 | WP_245078364.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| MPG28_RS00260 (MPG28_00260) | - | 60324..60887 (+) | 564 | WP_000780124.1 | UbiX family flavin prenyltransferase | - |
| MPG28_RS00265 (MPG28_00265) | coaD | 60887..61360 (+) | 474 | WP_014535680.1 | pantetheine-phosphate adenylyltransferase | - |
| MPG28_RS00270 (MPG28_00270) | tmk | 61362..61937 (+) | 576 | WP_245078366.1 | dTMP kinase | - |
| MPG28_RS00275 (MPG28_00275) | comFC | 61925..62500 (+) | 576 | WP_245078368.1 | ComF family protein | Machinery gene |
| MPG28_RS00280 (MPG28_00280) | - | 62533..62928 (+) | 396 | Protein_54 | VRR-NUC domain-containing protein | - |
| MPG28_RS00285 (MPG28_00285) | - | 62910..63677 (-) | 768 | WP_245078370.1 | Eco47II family restriction endonuclease | - |
| MPG28_RS00290 (MPG28_00290) | dcm | 63646..64677 (-) | 1032 | WP_245078372.1 | DNA (cytosine-5-)-methyltransferase | - |
| MPG28_RS00295 (MPG28_00295) | - | 64727..65864 (+) | 1138 | Protein_57 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21323.89 Da Isoelectric Point: 9.0901
>NTDB_id=667381 MPG28_RS00275 WP_245078368.1 61925..62500(+) (comFC) [Helicobacter pylori strain Hpfe040]
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNAPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRANNPRDFTFKGDKDLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNAPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRANNPRDFTFKGDKDLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=667381 MPG28_RS00275 WP_245078368.1 61925..62500(+) (comFC) [Helicobacter pylori strain Hpfe040]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCTCAAATTGCTTGAACGATTTACCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTAAACGCTCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAGATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCACTTTGCGATCGCTCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCTCAAATTGCTTGAACGATTTACCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTAAACGCTCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAGATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCACTTTGCGATCGCTCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.288 |
100 |
0.953 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |