Detailed information NTG0667283

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: MPF99_RS03235
• Genome accession: NZ_CP094130
• Coordinates: 664088..664663 (-)
• Length: 191 a.a.
• NCBI ID: WP_245059389.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe053
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	654072..668972	664088..664663	within	0

Gene organization within MGE regions

Location: 654072..668972

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPF99_RS03190 (MPF99_03190)	-	654072..655205 (-)	1134	WP_024117318.1	ABC transporter permease	-
MPF99_RS03195 (MPF99_03195)	-	655339..656034 (+)	696	WP_015642261.1	outer membrane protein	-
MPF99_RS03200 (MPF99_03200)	ilvE	656039..657061 (-)	1023	WP_245059385.1	branched-chain-amino-acid transaminase	-
MPF99_RS03205 (MPF99_03205)	-	657111..657857 (-)	747	WP_050828125.1	outer membrane protein	-
MPF99_RS03210 (MPF99_03210)	polA	657971..660652 (-)	2682	WP_245059386.1	DNA polymerase I	-
MPF99_RS03215 (MPF99_03215)	-	660718..661861 (-)	1144	Protein_625	restriction endonuclease subunit S	-
MPF99_RS03220 (MPF99_03220)	dcm	661911..662942 (+)	1032	WP_342370053.1	DNA (cytosine-5-)-methyltransferase	-
MPF99_RS03225 (MPF99_03225)	-	662911..663678 (+)	768	WP_245059388.1	Eco47II family restriction endonuclease	-
MPF99_RS03230 (MPF99_03230)	-	663669..664055 (-)	387	Protein_628	VRR-NUC domain-containing protein	-
MPF99_RS03235 (MPF99_03235)	comFC	664088..664663 (-)	576	WP_245059389.1	ComF family protein	Machinery gene
MPF99_RS03240 (MPF99_03240)	tmk	664651..665226 (-)	576	WP_245059391.1	dTMP kinase	-
MPF99_RS03245 (MPF99_03245)	coaD	665228..665701 (-)	474	WP_001169259.1	pantetheine-phosphate adenylyltransferase	-
MPF99_RS03250 (MPF99_03250)	-	665701..666264 (-)	564	WP_000780124.1	UbiX family flavin prenyltransferase	-
MPF99_RS03255 (MPF99_03255)	flgA	666274..666930 (-)	657	WP_033582116.1	flagellar basal body P-ring formation chaperone FlgA	-
MPF99_RS03260 (MPF99_03260)	uvrD	666927..668972 (-)	2046	WP_245059400.1	DNA helicase UvrD	-

Sequence

Protein

• Length: 191 a.a.
• Molecular weight: 21302.93 Da
• Isoelectric Point: 8.5617

>NTDB_id=667283 MPF99_RS03235 WP_245059389.1 664088..664663(-) (comFC) [Helicobacter pylori strain Hpfe053]
MRCLTCLKLSFKPLCLNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYVLIGSRILPLLSQKAGAEFVKILQEKG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGCLRATNTISYAGKSLEFRANNPRDFTFKGDETLDYFLLDDII
TTGTTLKEALKHLKTLNIKAHFAIALCSADE

Nucleotide

• Length: 576 bp

>NTDB_id=667283 MPF99_RS03235 WP_245059389.1 664088..664663(-) (comFC) [Helicobacter pylori strain Hpfe053]
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTTAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
TGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCAGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGTGTTTAAGGGCGACTAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAACTTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAACACCTTAAAACCCTAAACATCAAAGCCCACTTTGCAATCGCTCTTTG
CAGCGCGGATGAATGA

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Helicobacter pylori 26695	93.717	100	0.937
ctsW	Campylobacter jejuni subsp. jejuni 81-176	37.629	100	0.382