Detailed information NTG0667256

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG85_RS00735
• Genome accession: NZ_CP094129
• Coordinates: 153287..154252 (+)
• Length: 321 a.a.
• NCBI ID: WP_245050851.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe054
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 148287..159252

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG85_RS00705 (MPG85_00705)	panD	149694..150044 (+)	351	WP_245050843.1	aspartate 1-decarboxylase	-
MPG85_RS00710 (MPG85_00710)	-	150055..150348 (+)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
MPG85_RS00715 (MPG85_00715)	-	150348..151343 (+)	996	WP_245051473.1	PDZ domain-containing protein	-
MPG85_RS00720 (MPG85_00720)	comB6	151351..152406 (+)	1056	WP_245050845.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG85_RS00725 (MPG85_00725)	comB7	152422..152547 (+)	126	WP_245050847.1	comB7 lipoprotein	Machinery gene
MPG85_RS00730 (MPG85_00730)	comB8	152544..153287 (+)	744	WP_245050849.1	virB8 family protein	Machinery gene
MPG85_RS00735 (MPG85_00735)	comB9	153287..154252 (+)	966	WP_245050851.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG85_RS00740 (MPG85_00740)	comB10	154245..155381 (+)	1137	WP_245050853.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG85_RS00745 (MPG85_00745)	-	155447..156859 (+)	1413	WP_245050855.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG85_RS00750 (MPG85_00750)	gmd	156874..158019 (+)	1146	WP_245050857.1	GDP-mannose 4,6-dehydratase	-
MPG85_RS00755 (MPG85_00755)	-	158012..158944 (+)	933	WP_245050859.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 36868.44 Da
• Isoelectric Point: 9.3758

>NTDB_id=667256 MPG85_RS00735 WP_245050851.1 153287..154252(+) (comB9) [Helicobacter pylori strain Hpfe054]
MRKVLCALVGFLLAFSALKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKAPTNNNKSLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKS
KLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGKD
E

Nucleotide

• Length: 966 bp

>NTDB_id=667256 MPG85_RS00735 WP_245050851.1 153287..154252(+) (comB9) [Helicobacter pylori strain Hpfe054]
ATGCGTAAGGTTTTGTGCGCTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGCATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAGAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCACAAAACAAAGAAAATACCCTTGAAAAGGCCCCCACAAACAATAACAAATCCTT
AAAAGAAGAAAAAGAAGAAACTAAAGAAGAAGAGACTATAACGATTGGCGATAACACTAATGCAATGAAAATCGTTAAAA
AAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCC
AAACTCTCTTTGATGCCTGAAGAAATTTTCAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTC
TAAATTCCCAGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCG
CTGAAGATGTCTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.025	100	0.935