Detailed information NTG0667236

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG79_RS00730
• Genome accession: NZ_CP094128
• Coordinates: 155907..156872 (+)
• Length: 321 a.a.
• NCBI ID: WP_245107551.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe055
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 150907..161872

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG79_RS00700 (MPG79_00700)	panD	152320..152670 (+)	351	WP_000142213.1	aspartate 1-decarboxylase	-
MPG79_RS00705 (MPG79_00705)	-	152681..152974 (+)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
MPG79_RS00710 (MPG79_00710)	-	152974..153969 (+)	996	WP_245107863.1	PDZ domain-containing protein	-
MPG79_RS00715 (MPG79_00715)	comB6	153977..155032 (+)	1056	WP_245107864.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG79_RS00720 (MPG79_00720)	comB7	155048..155173 (+)	126	WP_220877914.1	comB7 lipoprotein	Machinery gene
MPG79_RS00725 (MPG79_00725)	comB8	155170..155907 (+)	738	WP_245107550.1	virB8 family protein	Machinery gene
MPG79_RS00730 (MPG79_00730)	comB9	155907..156872 (+)	966	WP_245107551.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG79_RS00735 (MPG79_00735)	comB10	156865..158001 (+)	1137	WP_245107552.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG79_RS00740 (MPG79_00740)	-	158071..159483 (+)	1413	WP_245107553.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG79_RS00745 (MPG79_00745)	gmd	159497..160642 (+)	1146	WP_245107554.1	GDP-mannose 4,6-dehydratase	-
MPG79_RS00750 (MPG79_00750)	-	160635..161567 (+)	933	WP_245107555.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 36897.52 Da
• Isoelectric Point: 9.3756

>NTDB_id=667236 MPG79_RS00730 WP_245107551.1 155907..156872(+) (comB9) [Helicobacter pylori strain Hpfe055]
MRKVLCALVGFLLAFSVLKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKAPTNNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKS
KLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKD
E

Nucleotide

• Length: 966 bp

>NTDB_id=667236 MPG79_RS00730 WP_245107551.1 155907..156872(+) (comB9) [Helicobacter pylori strain Hpfe055]
ATGCGTAAGGTTTTATGCGCTCTTGTGGGTTTTTTGTTGGCTTTTAGCGTTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAGGATTTAAACGCTATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCTATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTACTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAAGGCCCCCACAAACAACAACAAACCCTT
AAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAA
AAGACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGGGGATTTGTTCTAAAAAATCC
AAACTCTCTTTGATGCCTGAAGAAATTTTCAACGACAAGCAGTTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTC
TAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCAGTGAATACTAGGATTGTGGGCGATTACATTATCG
CTGAAGATGTCTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.331	100	0.938