Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPG79_RS00725 Genome accession   NZ_CP094128
Coordinates   155170..155907 (+) Length   245 a.a.
NCBI ID   WP_245107550.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe055     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 150170..160907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG79_RS00700 (MPG79_00700) panD 152320..152670 (+) 351 WP_000142213.1 aspartate 1-decarboxylase -
  MPG79_RS00705 (MPG79_00705) - 152681..152974 (+) 294 WP_000347916.1 YbaB/EbfC family nucleoid-associated protein -
  MPG79_RS00710 (MPG79_00710) - 152974..153969 (+) 996 WP_245107863.1 PDZ domain-containing protein -
  MPG79_RS00715 (MPG79_00715) comB6 153977..155032 (+) 1056 WP_245107864.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG79_RS00720 (MPG79_00720) comB7 155048..155173 (+) 126 WP_220877914.1 comB7 lipoprotein Machinery gene
  MPG79_RS00725 (MPG79_00725) comB8 155170..155907 (+) 738 WP_245107550.1 virB8 family protein Machinery gene
  MPG79_RS00730 (MPG79_00730) comB9 155907..156872 (+) 966 WP_245107551.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG79_RS00735 (MPG79_00735) comB10 156865..158001 (+) 1137 WP_245107552.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG79_RS00740 (MPG79_00740) - 158071..159483 (+) 1413 WP_245107553.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG79_RS00745 (MPG79_00745) gmd 159497..160642 (+) 1146 WP_245107554.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28517.74 Da        Isoelectric Point: 8.9546

>NTDB_id=667235 MPG79_RS00725 WP_245107550.1 155170..155907(+) (comB8) [Helicobacter pylori strain Hpfe055]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVSDLDMQSVFRLERNRLKIAYKLLGLMSFIALILAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
TNRGD

Nucleotide


Download         Length: 738 bp        

>NTDB_id=667235 MPG79_RS00725 WP_245107550.1 155170..155907(+) (comB8) [Helicobacter pylori strain Hpfe055]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAGTTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAGTGATTTGGACATGCAAAGCGTGTTCAGACTGGAGAGGAATCGCTTGAAAATTGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTATCTTAGCGATTGTTTTAATCAGTGTTTTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAAGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTTATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATCAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTAGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCTATTGCAGCTAAACTCATGAACGAAAACAAACTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGTTACAGCATCACTGAAATC
ACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.571

100

0.984

Multiple sequence alignment