Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG79_RS00010 Genome accession   NZ_CP094128
Coordinates   1573..3021 (+) Length   482 a.a.
NCBI ID   WP_245107903.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe055     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG79_RS00005 (MPG79_00005) dnaA 1..1368 (+) 1368 WP_245107477.1 chromosomal replication initiator protein DnaA -
  MPG79_RS00010 (MPG79_00010) comH 1573..3021 (+) 1449 WP_245107903.1 competence protein Machinery gene
  MPG79_RS00020 (MPG79_00020) - 3199..3951 (+) 753 WP_060453514.1 exodeoxyribonuclease III -
  MPG79_RS00025 (MPG79_00025) - 3948..4583 (-) 636 WP_057112702.1 outer membrane protein -
  MPG79_RS00030 (MPG79_00030) - 4587..4940 (-) 354 WP_245107478.1 hypothetical protein -
  MPG79_RS00035 (MPG79_00035) recG 5022..6893 (+) 1872 WP_245107479.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 482 a.a.        Molecular weight: 55240.23 Da        Isoelectric Point: 7.2364

>NTDB_id=667231 MPG79_RS00010 WP_245107903.1 1573..3021(+) (comH) [Helicobacter pylori strain Hpfe055]
MKRNQHEKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVY
QPLDEKLSLETTLNPNRPTIPRNTQIVFSSKELKEPHQMPSLNAPIQKPQNKPTSSQQSLQNFPYSESKLGSKNPKNSLL
QPLATPSKISSANEVKTPTNDTKPPLKHSSEDQENNLFVAPPTEKTLPNNTPNANINEHNESNENRDSVEKQAIRDPNVK
EFVCGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTIL
QARSSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYQITTQLVKAVYERPKQDDQIEPTFYETSELAYSSTRKSEITH
NELNLNEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRLKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFN
EV

Nucleotide


Download         Length: 1449 bp        

>NTDB_id=667231 MPG79_RS00010 WP_245107903.1 1573..3021(+) (comH) [Helicobacter pylori strain Hpfe055]
ATAAAAAGGAATCAACATGAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGAT
CGAGCTTTTAGAAGAAATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGAC
AAGTTTTAGGCGTTTATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTAT
CAACCCCTTGATGAAAAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATTCCCAGAAACACCCAAATTGT
CTTTTCTTCAAAAGAATTGAAAGAGCCGCACCAAATGCCTTCTTTAAACGCACCCATACAAAAACCACAAAACAAACCCA
CTTCATCGCAACAATCTCTTCAAAACTTTCCTTACTCAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTA
CAACCTTTAGCCACTCCTAGTAAAATAAGCTCCGCTAATGAAGTTAAAACACCAACAAACGACACTAAACCCCCTTTAAA
GCATTCTTCAGAAGATCAAGAAAACAACCTCTTTGTAGCACCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACG
CTAATATTAATGAACACAATGAAAGCAATGAGAATAGGGATAGTGTGGAAAAACAAGCGATTAGAGATCCTAATGTTAAA
GAATTTGTGTGCGGGAAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGA
AGACAAACAGACTGCGACAGACATTACCCCTTGCGATTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCT
ATACTAAAATCTCTGTTCATAAAACAGAGCCTTTAGAAGAACCGCAAACTTTTGAAGCTAAAAACAATTTTACCATTCTC
CAAGCCAGAAGCTCTACAGAAAAATGTAAAAGGGCCAGAGCGCGAAAAGACGGCACGACCAGGCAATGCTATCTCATAGA
AGAGCCTTTAAAACAAGCGTGGGAGAGCGAGTATCAAATCACCACGCAATTAGTGAAAGCTGTATATGAGCGCCCCAAAC
AAGACGATCAAATAGAGCCGACTTTCTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCAT
AATGAATTGAATTTGAATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGA
AAGCAGTGAATACAAAGAATGGGTTAAAAACCATGTGCGTTTAAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGC
AACCACGAGCCAAAAGCACGCCTTTGAGCATTGAAAACTCTCGTGTTGTTTGCGTTAAAAAAGGGAATTATTTATTCAAC
GAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

92.034

98.963

0.911

Multiple sequence alignment