Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | MPG06_RS00275 | Genome accession | NZ_CP094126 |
| Coordinates | 62817..63392 (+) | Length | 191 a.a. |
| NCBI ID | WP_245052385.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe056 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 62254..87312 | 62817..63392 | within | 0 |
Gene organization within MGE regions
Location: 62254..87312
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG06_RS00270 (MPG06_00270) | tmk | 62254..62829 (+) | 576 | WP_245057846.1 | dTMP kinase | - |
| MPG06_RS00275 (MPG06_00275) | comFC | 62817..63392 (+) | 576 | WP_245052385.1 | ComF family protein | Machinery gene |
| MPG06_RS00280 (MPG06_00280) | - | 63425..65464 (+) | 2040 | WP_245057848.1 | N-6 DNA methylase | - |
| MPG06_RS00285 (MPG06_00285) | - | 65461..66360 (+) | 900 | Protein_55 | restriction endonuclease subunit S | - |
| MPG06_RS00290 (MPG06_00290) | - | 66448..67100 (+) | 653 | Protein_56 | IS607-like element IS607 family transposase | - |
| MPG06_RS00295 (MPG06_00295) | - | 67075..68334 (+) | 1260 | WP_245057114.1 | transposase | - |
| MPG06_RS00300 (MPG06_00300) | - | 68387..68716 (+) | 330 | Protein_58 | restriction endonuclease subunit S | - |
| MPG06_RS00305 (MPG06_00305) | polA | 68782..71463 (+) | 2682 | WP_245057850.1 | DNA polymerase I | - |
| MPG06_RS00310 (MPG06_00310) | - | 71577..72323 (+) | 747 | WP_245057852.1 | outer membrane protein | - |
| MPG06_RS00315 (MPG06_00315) | ilvE | 72374..73396 (+) | 1023 | WP_245057854.1 | branched-chain-amino-acid transaminase | - |
| MPG06_RS00320 (MPG06_00320) | - | 73666..74361 (-) | 696 | WP_000473381.1 | outer membrane protein | - |
| MPG06_RS00325 (MPG06_00325) | - | 74495..75628 (+) | 1134 | WP_245057856.1 | ABC transporter permease | - |
| MPG06_RS00330 (MPG06_00330) | - | 75628..76413 (+) | 786 | WP_156605061.1 | ABC transporter ATP-binding protein | - |
| MPG06_RS00335 (MPG06_00335) | - | 76398..77213 (+) | 816 | WP_245057858.1 | MlaD family protein | - |
| MPG06_RS00340 (MPG06_00340) | - | 77216..77893 (+) | 678 | WP_180587185.1 | hypothetical protein | - |
| MPG06_RS00345 (MPG06_00345) | - | 77912..78499 (+) | 588 | WP_245057860.1 | META domain-containing protein | - |
| MPG06_RS00350 (MPG06_00350) | - | 78742..79053 (+) | 312 | WP_129066518.1 | addiction module antidote protein | - |
| MPG06_RS00355 (MPG06_00355) | dcm | 79053..80159 (+) | 1107 | WP_245057862.1 | DNA (cytosine-5-)-methyltransferase | - |
| MPG06_RS00360 (MPG06_00360) | dcm | 80159..81121 (+) | 963 | WP_245057864.1 | DNA (cytosine-5-)-methyltransferase | - |
| MPG06_RS00365 (MPG06_00365) | - | 81114..82376 (+) | 1263 | WP_245057866.1 | HNH endonuclease signature motif containing protein | - |
| MPG06_RS00370 (MPG06_00370) | - | 82477..83529 (-) | 1053 | WP_245057868.1 | cytochrome-c peroxidase | - |
| MPG06_RS00375 (MPG06_00375) | dnaE | 83677..87312 (+) | 3636 | WP_245057870.1 | DNA polymerase III subunit alpha | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21293.90 Da Isoelectric Point: 9.0940
>NTDB_id=667209 MPG06_RS00275 WP_245052385.1 62817..63392(+) (comFC) [Helicobacter pylori strain Hpfe056]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRAANTISYAGKSLEFRANNPRNFTFKGDETLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRAANTISYAGKSLEFRANNPRNFTFKGDETLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=667209 MPG06_RS00275 WP_245052385.1 62817..63392(+) (comFC) [Helicobacter pylori strain Hpfe056]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCCTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTACCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTGCTAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAACTTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCCTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTACCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTGCTAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAACTTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.812 |
100 |
0.958 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.979 |
100 |
0.372 |