Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPG01_RS00715 Genome accession   NZ_CP094124
Coordinates   154989..155726 (+) Length   245 a.a.
NCBI ID   WP_000660546.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe057     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 149989..160726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG01_RS00690 (MPG01_00690) panD 152141..152491 (+) 351 WP_000142213.1 aspartate 1-decarboxylase -
  MPG01_RS00695 (MPG01_00695) - 152502..152795 (+) 294 WP_000347923.1 YbaB/EbfC family nucleoid-associated protein -
  MPG01_RS00700 (MPG01_00700) - 152795..153790 (+) 996 WP_245038366.1 PDZ domain-containing protein -
  MPG01_RS00705 (MPG01_00705) comB6 153796..154851 (+) 1056 WP_000786667.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG01_RS00710 (MPG01_00710) comB7 154867..154992 (+) 126 WP_001217867.1 hypothetical protein Machinery gene
  MPG01_RS00715 (MPG01_00715) comB8 154989..155726 (+) 738 WP_000660546.1 virB8 family protein Machinery gene
  MPG01_RS00720 (MPG01_00720) comB9 155726..156688 (+) 963 WP_245037787.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG01_RS00725 (MPG01_00725) comB10 156681..157835 (+) 1155 WP_245037789.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG01_RS00730 (MPG01_00730) - 157886..159298 (+) 1413 WP_245037791.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG01_RS00735 (MPG01_00735) gmd 159312..160457 (+) 1146 WP_245037792.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28489.69 Da        Isoelectric Point: 8.9546

>NTDB_id=667190 MPG01_RS00715 WP_000660546.1 154989..155726(+) (comB8) [Helicobacter pylori strain Hpfe057]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVSDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
TNRGD

Nucleotide


Download         Length: 738 bp        

>NTDB_id=667190 MPG01_RS00715 WP_000660546.1 154989..155726(+) (comB8) [Helicobacter pylori strain Hpfe057]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAGTGATTTGGACATGCAAAGCGTGTTTAGACTGGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATTGTTTTAATCAGTGTTTTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATCAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCCATTGCAGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
ACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.761

100

0.976

Multiple sequence alignment