Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG73_RS02500 Genome accession   NZ_CP094122
Coordinates   500170..500433 (+) Length   87 a.a.
NCBI ID   WP_001177712.1    Uniprot ID   A0AB33Z5Y9
Organism   Helicobacter pylori strain Hpfe058     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 495170..505433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG73_RS02475 (MPG73_02475) - 496361..497286 (-) 926 Protein_473 hypothetical protein -
  MPG73_RS02480 (MPG73_02480) - 497394..498208 (-) 815 Protein_474 hypothetical protein -
  MPG73_RS02485 (MPG73_02485) - 498507..499295 (+) 789 WP_245057532.1 integrase -
  MPG73_RS02490 (MPG73_02490) - 499399..499878 (+) 480 WP_195836226.1 hypothetical protein -
  MPG73_RS02495 (MPG73_02495) comB2 499875..500159 (+) 285 WP_000736478.1 TrbC/VirB2 family protein Machinery gene
  MPG73_RS02500 (MPG73_02500) comB3 500170..500433 (+) 264 WP_001177712.1 hypothetical protein Machinery gene
  MPG73_RS02505 (MPG73_02505) - 500444..500680 (+) 237 WP_001183709.1 hypothetical protein -
  MPG73_RS02510 (MPG73_02510) - 500680..502407 (+) 1728 Protein_480 FtsK/SpoIIIE domain-containing protein -
  MPG73_RS02515 (MPG73_02515) - 502463..503722 (-) 1260 WP_245057044.1 transposase -
  MPG73_RS02520 (MPG73_02520) - 503697..504350 (-) 654 WP_154415739.1 IS607-like element IS607 family transposase -
  MPG73_RS02525 (MPG73_02525) - 504437..505288 (+) 852 Protein_483 transporter -
  MPG73_RS02530 (MPG73_02530) - 505285..505419 (+) 135 WP_000738749.1 hypothetical protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10002.89 Da        Isoelectric Point: 5.7206

>NTDB_id=667173 MPG73_RS02500 WP_001177712.1 500170..500433(+) (comB3) [Helicobacter pylori strain Hpfe058]
MQLVGISVSNLKEISSKEKFLWLNAKSFLIAGFIPFVMIPWLDFLNSLMLYVCFLLVFSIAEFFDEDISDILIAHSKIKT
KTNSFYA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=667173 MPG73_RS02500 WP_001177712.1 500170..500433(+) (comB3) [Helicobacter pylori strain Hpfe058]
ATGCAATTAGTCGGCATTTCAGTTTCTAATCTCAAAGAAATCAGTTCTAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTAATCGCAGGATTTATTCCTTTTGTAATGATACCTTGGCTAGATTTTTTAAATTCTTTAATGCTGTATGTGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGCGACATTTTAATCGCCCATTCTAAGATTAAAACC
AAAACTAATTCATTTTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

59.77

100

0.598

Multiple sequence alignment