Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   MPG74_RS00285 Genome accession   NZ_CP094120
Coordinates   66083..66658 (+) Length   191 a.a.
NCBI ID   WP_245069587.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe061     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 61083..71658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG74_RS00260 (MPG74_00260) uvrD 61774..63819 (+) 2046 WP_245069581.1 DNA helicase UvrD -
  MPG74_RS00265 (MPG74_00265) flgA 63816..64472 (+) 657 WP_245069583.1 flagellar basal body P-ring formation chaperone FlgA -
  MPG74_RS00270 (MPG74_00270) - 64482..65045 (+) 564 WP_245069585.1 UbiX family flavin prenyltransferase -
  MPG74_RS00275 (MPG74_00275) coaD 65045..65518 (+) 474 WP_140486162.1 pantetheine-phosphate adenylyltransferase -
  MPG74_RS00280 (MPG74_00280) tmk 65520..66095 (+) 576 WP_089482152.1 dTMP kinase -
  MPG74_RS00285 (MPG74_00285) comFC 66083..66658 (+) 576 WP_245069587.1 ComF family protein Machinery gene
  MPG74_RS00290 (MPG74_00290) - 66691..67077 (+) 387 Protein_57 VRR-NUC domain-containing protein -
  MPG74_RS00295 (MPG74_00295) - 67068..67835 (-) 768 WP_001920187.1 Eco47II family restriction endonuclease -
  MPG74_RS00300 (MPG74_00300) dcm 67804..68835 (-) 1032 WP_203296999.1 DNA (cytosine-5-)-methyltransferase -
  MPG74_RS00305 (MPG74_00305) - 68885..69439 (+) 555 WP_342369782.1 restriction endonuclease subunit S -
  MPG74_RS00310 (MPG74_00310) - 69466..70023 (+) 558 WP_245069589.1 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21230.73 Da        Isoelectric Point: 8.7493

>NTDB_id=667125 MPG74_RS00285 WP_245069587.1 66083..66658(+) (comFC) [Helicobacter pylori strain Hpfe061]
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGCLRATNAVSYAGKSLEFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNTKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=667125 MPG74_RS00285 WP_245069587.1 66083..66658(+) (comFC) [Helicobacter pylori strain Hpfe061]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCTGCGCTTTTAAAAGG
ATTTTGTCAAGGCAATTTAAAGCCCACTTATGGGTGTTTAAGGGCTACTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACACAAAAGCGCATTTTGCGATCGCTCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

95.812

100

0.958
  ctsW Campylobacter jejuni subsp. jejuni 81-176

35.938

100

0.361

Multiple sequence alignment