Detailed information NTG0667109

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG78_RS00715
• Genome accession: NZ_CP094119
• Coordinates: 154247..155209 (+)
• Length: 320 a.a.
• NCBI ID: WP_245040280.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe064
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 149247..160209

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG78_RS00685 (MPG78_00685)	panD	150656..151006 (+)	351	WP_245040278.1	aspartate 1-decarboxylase	-
MPG78_RS00690 (MPG78_00690)	-	151017..151310 (+)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
MPG78_RS00695 (MPG78_00695)	-	151310..152305 (+)	996	WP_245041096.1	PDZ domain-containing protein	-
MPG78_RS00700 (MPG78_00700)	comB6	152311..153366 (+)	1056	WP_245027257.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG78_RS00705 (MPG78_00705)	comB7	153382..153507 (+)	126	WP_180434254.1	comB7 lipoprotein	Machinery gene
MPG78_RS00710 (MPG78_00710)	comB8	153504..154247 (+)	744	WP_000660529.1	virB8 family protein	Machinery gene
MPG78_RS00715 (MPG78_00715)	comB9	154247..155209 (+)	963	WP_245040280.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG78_RS00720 (MPG78_00720)	comB10	155202..156338 (+)	1137	WP_245040282.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG78_RS00725 (MPG78_00725)	-	156408..157820 (+)	1413	WP_245040284.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG78_RS00730 (MPG78_00730)	gmd	157834..158979 (+)	1146	WP_245040286.1	GDP-mannose 4,6-dehydratase	-
MPG78_RS00735 (MPG78_00735)	-	158972..159904 (+)	933	WP_245040288.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36923.45 Da
• Isoelectric Point: 9.3455

>NTDB_id=667109 MPG78_RS00715 WP_245040280.1 154247..155209(+) (comB9) [Helicobacter pylori strain Hpfe064]
MRKVLYALVGFLLVFSALKADDFLEEANETAPTNLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILFIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLENTPTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=667109 MPG78_RS00715 WP_245040280.1 154247..155209(+) (comB9) [Helicobacter pylori strain Hpfe064]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGTTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCCACGAATTTAAACCATCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGTTTTGATGCGAAAATCTTAGAGAG
TAACGATCGTATTTTGTTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACTCTTGAAAATACCCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTCAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCAGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGACTACATTATCGCTG
AAGATGTTTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.638	100	0.944