Detailed information NTG0667089

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG34_RS00730
• Genome accession: NZ_CP094117
• Coordinates: 152179..153144 (+)
• Length: 321 a.a.
• NCBI ID: WP_245106002.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe065
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 147179..158144

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG34_RS00700 (MPG34_00700)	panD	148600..148950 (+)	351	WP_245078461.1	aspartate 1-decarboxylase	-
MPG34_RS00705 (MPG34_00705)	-	148961..149254 (+)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
MPG34_RS00710 (MPG34_00710)	-	149254..150249 (+)	996	WP_245106354.1	PDZ domain-containing protein	-
MPG34_RS00715 (MPG34_00715)	comB6	150255..151310 (+)	1056	WP_231246801.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG34_RS00720 (MPG34_00720)	comB7	151326..151439 (+)	114	WP_079298300.1	comB7 lipoprotein	Machinery gene
MPG34_RS00725 (MPG34_00725)	comB8	151436..152179 (+)	744	WP_245106001.1	virB8 family protein	Machinery gene
MPG34_RS00730 (MPG34_00730)	comB9	152179..153144 (+)	966	WP_245106002.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG34_RS00735 (MPG34_00735)	comB10	153137..154273 (+)	1137	WP_245106003.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG34_RS00740 (MPG34_00740)	-	154343..155755 (+)	1413	WP_245106004.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG34_RS00745 (MPG34_00745)	gmd	155769..156914 (+)	1146	WP_014537398.1	GDP-mannose 4,6-dehydratase	-
MPG34_RS00750 (MPG34_00750)	-	156907..157839 (+)	933	WP_245106005.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 36931.52 Da
• Isoelectric Point: 9.4585

>NTDB_id=667089 MPG34_RS00730 WP_245106002.1 152179..153144(+) (comB9) [Helicobacter pylori strain Hpfe065]
MRKVLYALVGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKALTNNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKS
KLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGKD
E

Nucleotide

• Length: 966 bp

>NTDB_id=667089 MPG34_RS00730 WP_245106002.1 152179..153144(+) (comB9) [Helicobacter pylori strain Hpfe065]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAAGGCCCTCACAAACAACAACAAACCCTT
AAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAA
AAGACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCC
AAACTCTCTTTGATGCCTGAAGAAATTTTCAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCACTCTC
TAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAATCCGGTGAATACTAGGATTGTGGGCGATTACATTATCG
CTGAAGATGTCTCGGCTAAATGGACTTTAAGATTAGGCAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	94.785	100	0.963