Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPG34_RS00725 Genome accession   NZ_CP094117
Coordinates   151436..152179 (+) Length   247 a.a.
NCBI ID   WP_245106001.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe065     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 146436..157179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG34_RS00700 (MPG34_00700) panD 148600..148950 (+) 351 WP_245078461.1 aspartate 1-decarboxylase -
  MPG34_RS00705 (MPG34_00705) - 148961..149254 (+) 294 WP_000347916.1 YbaB/EbfC family nucleoid-associated protein -
  MPG34_RS00710 (MPG34_00710) - 149254..150249 (+) 996 WP_245106354.1 PDZ domain-containing protein -
  MPG34_RS00715 (MPG34_00715) comB6 150255..151310 (+) 1056 WP_231246801.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG34_RS00720 (MPG34_00720) comB7 151326..151439 (+) 114 WP_079298300.1 comB7 lipoprotein Machinery gene
  MPG34_RS00725 (MPG34_00725) comB8 151436..152179 (+) 744 WP_245106001.1 virB8 family protein Machinery gene
  MPG34_RS00730 (MPG34_00730) comB9 152179..153144 (+) 966 WP_245106002.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG34_RS00735 (MPG34_00735) comB10 153137..154273 (+) 1137 WP_245106003.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG34_RS00740 (MPG34_00740) - 154343..155755 (+) 1413 WP_245106004.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG34_RS00745 (MPG34_00745) gmd 155769..156914 (+) 1146 WP_014537398.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28718.00 Da        Isoelectric Point: 8.9546

>NTDB_id=667088 MPG34_RS00725 WP_245106001.1 151436..152179(+) (comB8) [Helicobacter pylori strain Hpfe065]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVSDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
MQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=667088 MPG34_RS00725 WP_245106001.1 151436..152179(+) (comB8) [Helicobacter pylori strain Hpfe065]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAACTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAGTGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAGCTCTTAGGTTTGATGAGTTTTATCGCTCTTGTTTTAGCGATCGTGTTAATCAGTGTTTTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAAGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCTAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAGCGCTTTGAAGATTTGATCAAAACGCAAAACAGCATTTAT
ATGCAAAGCCATTTGGAAAGAGAAGTCCACATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCCATTGCAGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.571

100

0.976

Multiple sequence alignment