Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | MPG34_RS00275 | Genome accession | NZ_CP094117 |
| Coordinates | 62820..63395 (+) | Length | 191 a.a. |
| NCBI ID | WP_245105953.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe065 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 57820..68395
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG34_RS00250 (MPG34_00250) | uvrD | 58511..60556 (+) | 2046 | WP_245105950.1 | DNA helicase UvrD | - |
| MPG34_RS00255 (MPG34_00255) | flgA | 60553..61209 (+) | 657 | WP_245105951.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| MPG34_RS00260 (MPG34_00260) | - | 61219..61782 (+) | 564 | WP_000780125.1 | UbiX family flavin prenyltransferase | - |
| MPG34_RS00265 (MPG34_00265) | coaD | 61782..62255 (+) | 474 | WP_001169259.1 | pantetheine-phosphate adenylyltransferase | - |
| MPG34_RS00270 (MPG34_00270) | tmk | 62257..62832 (+) | 576 | WP_245105952.1 | dTMP kinase | - |
| MPG34_RS00275 (MPG34_00275) | comFC | 62820..63395 (+) | 576 | WP_245105953.1 | ComF family protein | Machinery gene |
| MPG34_RS00280 (MPG34_00280) | - | 63428..65467 (+) | 2040 | WP_245105954.1 | N-6 DNA methylase | - |
| MPG34_RS00285 (MPG34_00285) | - | 65464..66117 (+) | 654 | WP_245105955.1 | restriction endonuclease subunit S | - |
| MPG34_RS00290 (MPG34_00290) | - | 66144..66701 (+) | 558 | WP_245105956.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21257.80 Da Isoelectric Point: 8.5545
>NTDB_id=667085 MPG34_RS00275 WP_245105953.1 62820..63395(+) (comFC) [Helicobacter pylori strain Hpfe065]
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNAPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGCLRATNTISYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNAPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGCLRATNTISYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=667085 MPG34_RS00275 WP_245105953.1 62820..63395(+) (comFC) [Helicobacter pylori strain Hpfe065]
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTAAACGCTCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGTGTTTAAGGGCTACTAATACTATTTCGTATGCTGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCACACTTTGCAATCGCTCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTAAACGCTCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGTGTTTAAGGGCTACTAATACTATTTCGTATGCTGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCACACTTTGCAATCGCTCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
94.764 |
100 |
0.948 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |