Detailed information NTG0667047

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG80_RS00715
• Genome accession: NZ_CP094115
• Coordinates: 154480..155442 (+)
• Length: 320 a.a.
• NCBI ID: WP_245055684.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe068
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 149480..160442

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG80_RS00685 (MPG80_00685)	panD	150889..151239 (+)	351	WP_245055680.1	aspartate 1-decarboxylase	-
MPG80_RS00690 (MPG80_00690)	-	151250..151543 (+)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
MPG80_RS00695 (MPG80_00695)	-	151543..152538 (+)	996	WP_245056272.1	PDZ domain-containing protein	-
MPG80_RS00700 (MPG80_00700)	comB6	152544..153599 (+)	1056	WP_245055682.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG80_RS00705 (MPG80_00705)	comB7	153615..153740 (+)	126	WP_180393507.1	comB7 lipoprotein	Machinery gene
MPG80_RS00710 (MPG80_00710)	comB8	153737..154480 (+)	744	WP_000660524.1	virB8 family protein	Machinery gene
MPG80_RS00715 (MPG80_00715)	comB9	154480..155442 (+)	963	WP_245055684.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG80_RS00720 (MPG80_00720)	comB10	155435..156571 (+)	1137	WP_245055686.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG80_RS00725 (MPG80_00725)	-	156641..158053 (+)	1413	WP_245055688.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG80_RS00730 (MPG80_00730)	gmd	158067..159212 (+)	1146	WP_245055690.1	GDP-mannose 4,6-dehydratase	-
MPG80_RS00735 (MPG80_00735)	-	159205..160137 (+)	933	WP_245055692.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36786.36 Da
• Isoelectric Point: 9.3455

>NTDB_id=667047 MPG80_RS00715 WP_245055684.1 154480..155442(+) (comB9) [Helicobacter pylori strain Hpfe068]
MRKVLYALVGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQIQENTLEKAPTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=667047 MPG80_RS00715 WP_245055684.1 154480..155442(+) (comB9) [Helicobacter pylori strain Hpfe068]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGCTAGCTTTTAGTGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCA
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTAGGTTTTGATGCGAAAATTTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAATTCAAGAAAATACCCTTGAAAAGGCTCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACTAAAGAAGAAGAGACTATAACCATTGGCGATAATACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTCAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGACTACATTATCGCTG
AAGATGTTTCGGCTAAATGGACTTTAAGATTAGGCAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.638	100	0.944