Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG214_RS18485 Genome accession   NZ_CP108806
Coordinates   4325439..4326113 (-) Length   224 a.a.
NCBI ID   WP_363085026.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00872     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4320439..4331113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG214_RS18465 (OG214_18455) - 4321182..4322402 (-) 1221 WP_405985336.1 FAD-dependent monooxygenase -
  OG214_RS18470 (OG214_18460) - 4322399..4323796 (-) 1398 WP_405985337.1 MFS transporter -
  OG214_RS18475 (OG214_18465) - 4323920..4324231 (-) 312 Protein_3668 FtsX-like permease family protein -
  OG214_RS18480 (OG214_18470) - 4324253..4324966 (-) 714 WP_405985338.1 hypothetical protein -
  OG214_RS18485 (OG214_18475) vraR 4325439..4326113 (-) 675 WP_363085026.1 response regulator transcription factor Regulator
  OG214_RS18490 (OG214_18480) - 4326110..4327354 (-) 1245 WP_405985339.1 sensor histidine kinase -
  OG214_RS18495 (OG214_18485) - 4327694..4328107 (-) 414 WP_405985340.1 hypothetical protein -
  OG214_RS18500 (OG214_18490) - 4328306..4329016 (-) 711 WP_405985341.1 TenA family transcriptional regulator -
  OG214_RS18505 (OG214_18495) - 4329106..4329663 (-) 558 WP_365903349.1 EF-hand domain-containing protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24085.80 Da        Isoelectric Point: 6.2625

>NTDB_id=667047 OG214_RS18485 WP_363085026.1 4325439..4326113(-) (vraR) [Streptomyces sp. NBC_00872]
MTIRVIVVDDQAMVRAGFAALLAAQSDIDVVGEAPDGAQGVELSRRTHPDVVLMDVRMPEMDGLDAARRLLTPPPGVTHL
PRVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLITAVRVVASGDALLAPSVTRRLIADFARQRPAARGRSTLRLKAL
TERETEVLTLVARGRSNAEIAETLVLAGQTVKTHVSRVLTKLDLRDRAQAVVFAYESGLVAPGE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=667047 OG214_RS18485 WP_363085026.1 4325439..4326113(-) (vraR) [Streptomyces sp. NBC_00872]
ATGACGATCCGTGTCATCGTCGTCGACGACCAGGCCATGGTGCGTGCGGGTTTCGCCGCGCTGCTGGCCGCCCAGAGCGA
CATCGACGTGGTGGGCGAGGCCCCCGACGGCGCGCAGGGCGTCGAGCTCAGCCGGCGCACCCATCCCGACGTCGTGCTGA
TGGACGTCCGCATGCCCGAGATGGACGGTCTCGACGCCGCGCGCCGACTCCTCACGCCCCCGCCGGGCGTGACACACCTG
CCGCGCGTCCTGATGCTCACCACGTTCGACGTCGACGACTACGTCTACGAGGCGCTGCGGGCGGGCGCGAGCGGATTCCT
GCTCAAGGACGCGCCGCCGGCCGACCTCATCACGGCCGTACGCGTCGTCGCCTCGGGCGACGCGCTGCTCGCCCCCTCCG
TGACGCGCCGCCTGATCGCGGACTTCGCCCGGCAACGTCCCGCCGCCCGAGGCAGGTCCACGCTGCGGCTCAAGGCCCTG
ACGGAACGCGAGACCGAGGTGCTCACCCTGGTGGCCCGCGGCCGGTCCAACGCGGAGATCGCGGAGACGCTGGTGTTGGC
CGGGCAGACGGTGAAAACGCATGTGAGCCGCGTCCTCACCAAGCTCGACCTGCGCGACCGCGCCCAGGCGGTGGTCTTCG
CGTACGAATCGGGGCTGGTGGCCCCGGGCGAGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-121)

Bacterial regulatory proteins, luxR family (GerE)

(159-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.455

98.214

0.397
  degU Bacillus subtilis subsp. subtilis str. 168

37.445

100

0.379

Multiple sequence alignment