Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPG80_RS00710 Genome accession   NZ_CP094115
Coordinates   153737..154480 (+) Length   247 a.a.
NCBI ID   WP_000660524.1    Uniprot ID   A0AAI8F143
Organism   Helicobacter pylori strain Hpfe068     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 148737..159480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG80_RS00685 (MPG80_00685) panD 150889..151239 (+) 351 WP_245055680.1 aspartate 1-decarboxylase -
  MPG80_RS00690 (MPG80_00690) - 151250..151543 (+) 294 WP_000347916.1 YbaB/EbfC family nucleoid-associated protein -
  MPG80_RS00695 (MPG80_00695) - 151543..152538 (+) 996 WP_245056272.1 PDZ domain-containing protein -
  MPG80_RS00700 (MPG80_00700) comB6 152544..153599 (+) 1056 WP_245055682.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG80_RS00705 (MPG80_00705) comB7 153615..153740 (+) 126 WP_180393507.1 comB7 lipoprotein Machinery gene
  MPG80_RS00710 (MPG80_00710) comB8 153737..154480 (+) 744 WP_000660524.1 virB8 family protein Machinery gene
  MPG80_RS00715 (MPG80_00715) comB9 154480..155442 (+) 963 WP_245055684.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG80_RS00720 (MPG80_00720) comB10 155435..156571 (+) 1137 WP_245055686.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG80_RS00725 (MPG80_00725) - 156641..158053 (+) 1413 WP_245055688.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG80_RS00730 (MPG80_00730) gmd 158067..159212 (+) 1146 WP_245055690.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28684.91 Da        Isoelectric Point: 8.9546

>NTDB_id=667046 MPG80_RS00710 WP_000660524.1 153737..154480(+) (comB8) [Helicobacter pylori strain Hpfe068]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=667046 MPG80_RS00710 WP_000660524.1 153737..154480(+) (comB8) [Helicobacter pylori strain Hpfe068]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTCAGACTGGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATTGTGTTAATCAGTGTTTTACCCTTGCAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCTAGTAA
TGAAGCGTTGGCTCGTTCACTCATTGGGGCGTATGTGTTAAACCGGGAGAGCATTAACCGCATTGATGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATCAAAACGCAAAACAGCATTTAT
GCACAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCCATTGCAGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
GCACCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.166

100

0.972

Multiple sequence alignment