Detailed information
Bioinformatically predicted
Overview
| Name | comB6 | Type | Machinery gene |
| Locus tag | MPG80_RS00700 | Genome accession | NZ_CP094115 |
| Coordinates | 152544..153599 (+) | Length | 351 a.a. |
| NCBI ID | WP_245055682.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe068 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 147544..158599
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG80_RS00670 (MPG80_00670) | - | 147969..148382 (+) | 414 | WP_001023005.1 | universal stress protein | - |
| MPG80_RS00675 (MPG80_00675) | - | 148402..148677 (+) | 276 | WP_180581874.1 | ATP-dependent Clp protease adaptor ClpS | - |
| MPG80_RS00680 (MPG80_00680) | - | 148677..150899 (+) | 2223 | WP_245055678.1 | ATP-dependent Clp protease ATP-binding subunit | - |
| MPG80_RS00685 (MPG80_00685) | panD | 150889..151239 (+) | 351 | WP_245055680.1 | aspartate 1-decarboxylase | - |
| MPG80_RS00690 (MPG80_00690) | - | 151250..151543 (+) | 294 | WP_000347916.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPG80_RS00695 (MPG80_00695) | - | 151543..152538 (+) | 996 | WP_245056272.1 | PDZ domain-containing protein | - |
| MPG80_RS00700 (MPG80_00700) | comB6 | 152544..153599 (+) | 1056 | WP_245055682.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPG80_RS00705 (MPG80_00705) | comB7 | 153615..153740 (+) | 126 | WP_180393507.1 | comB7 lipoprotein | Machinery gene |
| MPG80_RS00710 (MPG80_00710) | comB8 | 153737..154480 (+) | 744 | WP_000660524.1 | virB8 family protein | Machinery gene |
| MPG80_RS00715 (MPG80_00715) | comB9 | 154480..155442 (+) | 963 | WP_245055684.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPG80_RS00720 (MPG80_00720) | comB10 | 155435..156571 (+) | 1137 | WP_245055686.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPG80_RS00725 (MPG80_00725) | - | 156641..158053 (+) | 1413 | WP_245055688.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 351 a.a. Molecular weight: 39877.79 Da Isoelectric Point: 8.8165
>NTDB_id=667044 MPG80_RS00700 WP_245055682.1 152544..153599(+) (comB6) [Helicobacter pylori strain Hpfe068]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSTSALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVVCLKKCFALGFYKPFLLLVGFLNMSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPSASSSVSSSTRESASKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSTSALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVVCLKKCFALGFYKPFLLLVGFLNMSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPSASSSVSSSTRESASKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
Nucleotide
Download Length: 1056 bp
>NTDB_id=667044 MPG80_RS00700 WP_245055682.1 152544..153599(+) (comB6) [Helicobacter pylori strain Hpfe068]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTTTAACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGCT
TGAAAGAACAGAATTTCTTCAGCACTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCTATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCACCTAACATGATTACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTCATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGTATGCCTAAAAAAATGCTTCGCTCTTGGATTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACATGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCATCCGCTTCTTCTAGCGTTTCTTCTTCTACAAGAGAAAGCGCCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTTTAACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGCT
TGAAAGAACAGAATTTCTTCAGCACTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCTATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCACCTAACATGATTACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTCATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGTATGCCTAAAAAAATGCTTCGCTCTTGGATTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACATGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCATCCGCTTCTTCTAGCGTTTCTTCTTCTACAAGAGAAAGCGCCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB6 | Helicobacter pylori 26695 |
97.151 |
100 |
0.972 |