Detailed information
Bioinformatically predicted
Overview
| Name | comB6 | Type | Machinery gene |
| Locus tag | MPG48_RS00710 | Genome accession | NZ_CP094113 |
| Coordinates | 148486..149541 (+) | Length | 351 a.a. |
| NCBI ID | WP_245065930.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe069 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 143486..154541
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG48_RS00680 (MPG48_00680) | - | 143911..144324 (+) | 414 | WP_001023005.1 | universal stress protein | - |
| MPG48_RS00685 (MPG48_00685) | - | 144344..144619 (+) | 276 | WP_000784917.1 | ATP-dependent Clp protease adaptor ClpS | - |
| MPG48_RS00690 (MPG48_00690) | - | 144619..146841 (+) | 2223 | WP_245065410.1 | ATP-dependent Clp protease ATP-binding subunit | - |
| MPG48_RS00695 (MPG48_00695) | panD | 146831..147181 (+) | 351 | WP_000142208.1 | aspartate 1-decarboxylase | - |
| MPG48_RS00700 (MPG48_00700) | - | 147192..147485 (+) | 294 | WP_000347922.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPG48_RS00705 (MPG48_00705) | - | 147485..148480 (+) | 996 | WP_245065928.1 | PDZ domain-containing protein | - |
| MPG48_RS00710 (MPG48_00710) | comB6 | 148486..149541 (+) | 1056 | WP_245065930.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPG48_RS00715 (MPG48_00715) | comB7 | 149557..149682 (+) | 126 | WP_001217867.1 | hypothetical protein | Machinery gene |
| MPG48_RS00720 (MPG48_00720) | comB8 | 149679..150416 (+) | 738 | WP_245065411.1 | virB8 family protein | Machinery gene |
| MPG48_RS00725 (MPG48_00725) | comB9 | 150416..151378 (+) | 963 | WP_245065412.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPG48_RS00730 (MPG48_00730) | comB10 | 151371..152507 (+) | 1137 | WP_245065413.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPG48_RS00735 (MPG48_00735) | - | 152577..153989 (+) | 1413 | WP_245065414.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 351 a.a. Molecular weight: 39815.79 Da Isoelectric Point: 8.8165
>NTDB_id=667021 MPG48_RS00710 WP_245065930.1 148486..149541(+) (comB6) [Helicobacter pylori strain Hpfe069]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNLFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANISQNALNSLQYITTPPASSPISTSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNLFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANISQNALNSLQYITTPPASSPISTSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
Nucleotide
Download Length: 1056 bp
>NTDB_id=667021 MPG48_RS00710 WP_245065930.1 148486..149541(+) (comB6) [Helicobacter pylori strain Hpfe069]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTTTAACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATCTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCACTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGTTCTTTAGGGGTGCTGTTTTTGGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGATTTTACAAGCCTTTTTTGTTGTTGG
TGGGCTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACATCAGCCAAAACGCCCTTAATTCCTTACAATACATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGTGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTTTAACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATCTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCACTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGTTCTTTAGGGGTGCTGTTTTTGGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGATTTTACAAGCCTTTTTTGTTGTTGG
TGGGCTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACATCAGCCAAAACGCCCTTAATTCCTTACAATACATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGTGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB6 | Helicobacter pylori 26695 |
96.296 |
100 |
0.963 |