Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG214_RS10185 Genome accession   NZ_CP108806
Coordinates   2397858..2398643 (+) Length   261 a.a.
NCBI ID   WP_066946872.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00872     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2392858..2403643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG214_RS10170 (OG214_10180) - 2393035..2393559 (+) 525 WP_363081395.1 TerD family protein -
  OG214_RS10175 (OG214_10185) - 2393820..2396714 (-) 2895 WP_383039461.1 vitamin B12-dependent ribonucleotide reductase -
  OG214_RS10180 (OG214_10190) nrdR 2396858..2397367 (-) 510 WP_363081393.1 transcriptional regulator NrdR -
  OG214_RS10185 (OG214_10195) dinR/lexA 2397858..2398643 (+) 786 WP_066946872.1 transcriptional repressor LexA Regulator
  OG214_RS10190 (OG214_10200) - 2398760..2400730 (-) 1971 WP_363081392.1 ATP-dependent DNA helicase -
  OG214_RS10195 (OG214_10205) - 2400769..2402646 (-) 1878 WP_405984567.1 IucA/IucC family protein -
  OG214_RS10200 (OG214_10210) - 2402707..2403444 (-) 738 WP_405984568.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28382.19 Da        Isoelectric Point: 7.4239

>NTDB_id=667022 OG214_RS10185 WP_066946872.1 2397858..2398643(+) (dinR/lexA) [Streptomyces sp. NBC_00872]
MTTTADSATITAQDRSQSRLEPVHAMNDAIMNPEGPKPTRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSM
REIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQQTDTTGKPAASYVPLVGRIAAGGPILAEESV
EDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFRREDGHVWLLPHNAAY
QPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 786 bp        

>NTDB_id=667022 OG214_RS10185 WP_066946872.1 2397858..2398643(+) (dinR/lexA) [Streptomyces sp. NBC_00872]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACGCGATCATGAATCCGGAGGGGCCCAAGCCCACCCGGTCATTGCCCGGCCGACCTCCAGGAATCAGGGCGGACAGCT
CCGGCCTCACCGACCGCCAGCGGCGGGTCATCGAGGTCATCCGTGACTCCGTCCAACGGCGTGGCTATCCGCCCTCGATG
CGGGAGATCGGCCAGGCCGTGGGCCTCTCCAGCACCTCGTCCGTCGCCCATCAGCTCATGGCCCTGGAACGCAAGGGCTT
TCTGCGCCGCGACCCGCACCGGCCCAGGGCGTACGAGGTACGCGGGTCCGACCAGCCGAGCACCCAGCAGACGGATACGA
CCGGCAAGCCCGCCGCCTCGTATGTCCCGCTGGTCGGCCGGATCGCGGCGGGCGGACCGATCCTCGCCGAGGAGTCGGTC
GAGGATGTCTTCCCGCTCCCCCGCCAACTGGTCGGGGACGGAGAGCTGTTCGTCCTCAAGGTCGTCGGCGATTCGATGAT
CGAGGCCGCGATCTGTGACGGTGACTGGGTGACGGTCCGCCGCCAGCCGGTCGCGGAGAACGGTGACATCGTCGCCGCGA
TGCTGGACGGCGAGGCCACGGTCAAGCGCTTCCGTCGTGAGGACGGCCATGTCTGGCTGCTCCCGCACAACGCGGCGTAC
CAACCCATCCCCGGTGACGAGGCAACGATCCTCGGCAAGGTGGTCGCGGTTCTGCGCCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(143-255)

LexA DNA binding domain (LexA_DNA_bind)

(54-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

81.226

0.375

Multiple sequence alignment