Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   SAJPND1_RS04670 Genome accession   NZ_AP014652
Coordinates   947741..948727 (+) Length   328 a.a.
NCBI ID   WP_000959289.1    Uniprot ID   -
Organism   Staphylococcus aureus strain TMUS2126     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 942741..953727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAJPND1_RS04645 (AXW71_RS04610) - 943530..943916 (+) 387 Protein_889 ABC transporter permease -
  SAJPND1_RS04650 (AXW71_RS04615) opp4C 943928..944809 (+) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  SAJPND1_RS04655 (AXW71_RS04620) trpS 944851..945840 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  SAJPND1_RS04660 (AXW71_RS04625) spxA 946135..946530 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  SAJPND1_RS04665 (AXW71_RS04630) mecA 946901..947620 (+) 720 WP_001217728.1 adaptor protein MecA -
  SAJPND1_RS04670 (AXW71_RS04635) coiA 947741..948727 (+) 987 WP_000959289.1 competence protein CoiA family protein Machinery gene
  SAJPND1_RS04675 (AXW71_RS04640) pepF 948775..950583 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  SAJPND1_RS04680 (AXW71_RS04645) yjbH 951043..951849 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  SAJPND1_RS04685 (AXW71_RS04650) - 951872..952237 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  SAJPND1_RS04690 (AXW71_RS04655) - 952341..952934 (-) 594 WP_000224619.1 CYTH domain-containing protein -
  SAJPND1_RS04695 (AXW71_RS04660) - 953120..953467 (+) 348 WP_001242102.1 hypothetical protein -

Sequence


Protein


Download         Length: 328 a.a.        Molecular weight: 38776.37 Da        Isoelectric Point: 9.5881

>NTDB_id=66700 SAJPND1_RS04670 WP_000959289.1 947741..948727(+) (coiA) [Staphylococcus aureus strain TMUS2126]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAIYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=66700 SAJPND1_RS04670 WP_000959289.1 947741..948727(+) (coiA) [Staphylococcus aureus strain TMUS2126]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATATATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.476

100

0.985

  coiA Staphylococcus aureus N315

97.866

100

0.979


Multiple sequence alignment