Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   MPG22_RS00270 Genome accession   NZ_CP094111
Coordinates   60691..61266 (+) Length   191 a.a.
NCBI ID   WP_245080106.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe070     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 55691..66266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG22_RS00245 (MPG22_00245) uvrD 56382..58427 (+) 2046 WP_245065367.1 DNA helicase UvrD -
  MPG22_RS00250 (MPG22_00250) flgA 58424..59080 (+) 657 WP_245065368.1 flagellar basal body P-ring formation chaperone FlgA -
  MPG22_RS00255 (MPG22_00255) - 59090..59653 (+) 564 WP_245065369.1 UbiX family flavin prenyltransferase -
  MPG22_RS00260 (MPG22_00260) coaD 59653..60126 (+) 474 WP_001169260.1 pantetheine-phosphate adenylyltransferase -
  MPG22_RS00265 (MPG22_00265) tmk 60128..60703 (+) 576 WP_245065370.1 dTMP kinase -
  MPG22_RS00270 (MPG22_00270) comFC 60691..61266 (+) 576 WP_245080106.1 ComF family protein Machinery gene
  MPG22_RS00275 (MPG22_00275) - 61288..62748 (-) 1461 WP_245065372.1 hypothetical protein -
  MPG22_RS00280 (MPG22_00280) - 62811..63950 (-) 1140 WP_050835218.1 DNA methyltransferase -
  MPG22_RS00285 (MPG22_00285) - 63954..64961 (-) 1008 WP_050835217.1 DNA adenine methylase -
  MPG22_RS00290 (MPG22_00290) - 64958..65197 (-) 240 WP_000777864.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21419.04 Da        Isoelectric Point: 9.2848

>NTDB_id=666997 MPG22_RS00270 WP_245080106.1 60691..61266(+) (comFC) [Helicobacter pylori strain Hpfe070]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVRILQEKG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRANNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIVLCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=666997 MPG22_RS00270 WP_245080106.1 60691..61266(+) (comFC) [Helicobacter pylori strain Hpfe070]
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAGTTTGTGAGAATCCTGCAAGAAAAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGAGCTAATAATACTATTTCGTATGCTGGAAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAGGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCACTTTGCAATCGTGCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

94.764

100

0.948
  ctsW Campylobacter jejuni subsp. jejuni 81-176

36.979

100

0.372