Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | MPG41_RS00275 | Genome accession | NZ_CP094109 |
| Coordinates | 63500..64075 (+) | Length | 191 a.a. |
| NCBI ID | WP_245067925.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe072 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 58500..69075
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG41_RS00250 (MPG41_00250) | uvrD | 59191..61236 (+) | 2046 | WP_245067922.1 | DNA helicase UvrD | - |
| MPG41_RS00255 (MPG41_00255) | flgA | 61233..61889 (+) | 657 | WP_096523132.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| MPG41_RS00260 (MPG41_00260) | - | 61899..62462 (+) | 564 | WP_154547481.1 | UbiX family flavin prenyltransferase | - |
| MPG41_RS00265 (MPG41_00265) | coaD | 62462..62935 (+) | 474 | WP_245067923.1 | pantetheine-phosphate adenylyltransferase | - |
| MPG41_RS00270 (MPG41_00270) | tmk | 62937..63512 (+) | 576 | WP_245067924.1 | dTMP kinase | - |
| MPG41_RS00275 (MPG41_00275) | comFC | 63500..64075 (+) | 576 | WP_245067925.1 | ComF family protein | Machinery gene |
| MPG41_RS00280 (MPG41_00280) | - | 64108..66148 (+) | 2041 | Protein_55 | N-6 DNA methylase | - |
| MPG41_RS07655 | - | 66145..66720 (+) | 576 | WP_342369476.1 | restriction endonuclease subunit S | - |
| MPG41_RS07660 | - | 66740..67351 (+) | 612 | WP_342369477.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21269.85 Da Isoelectric Point: 8.7493
>NTDB_id=666952 MPG41_RS00275 WP_245067925.1 63500..64075(+) (comFC) [Helicobacter pylori strain Hpfe072]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYTLIGSRILPLLSQKAGAEFVKILQEKG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGCLRATNAVSYAGKSLEFRANNPRNFTFKGDETLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYTLIGSRILPLLSQKAGAEFVKILQEKG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGCLRATNAVSYAGKSLEFRANNPRNFTFKGDETLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=666952 MPG41_RS00275 WP_245067925.1 63500..64075(+) (comFC) [Helicobacter pylori strain Hpfe072]
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACA
CGCTGATTGGCTCTCGCATTTTGCCATTGCTTTCTCAAAAAGCCGGCGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGAATACCCCCCTTTATGGCATTGCTATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGTGTTTAAGGGCTACTAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGTGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAACTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACTACCTTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACA
CGCTGATTGGCTCTCGCATTTTGCCATTGCTTTCTCAAAAAGCCGGCGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGAATACCCCCCTTTATGGCATTGCTATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGTGTTTAAGGGCTACTAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGTGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAACTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACTACCTTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
96.335 |
100 |
0.963 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |