Detailed information NTG0666881

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: MPG14_RS06300
• Genome accession: NZ_CP094102
• Coordinates: 1311091..1312146 (-)
• Length: 351 a.a.
• NCBI ID: WP_245053740.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe078
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1306091..1317146

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG14_RS06275 (MPG14_06275)	-	1306636..1308048 (-)	1413	WP_245053736.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG14_RS06280 (MPG14_06280)	-	1308118..1309255 (-)	1138	Protein_1231	DNA type IV secretion system protein ComB10	-
MPG14_RS06285 (MPG14_06285)	comB9	1309248..1310210 (-)	963	WP_245053738.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG14_RS06290 (MPG14_06290)	comB8	1310210..1310953 (-)	744	WP_000660524.1	virB8 family protein	Machinery gene
MPG14_RS06295 (MPG14_06295)	comB7	1310950..1311075 (-)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPG14_RS06300 (MPG14_06300)	comB6	1311091..1312146 (-)	1056	WP_245053740.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG14_RS06305 (MPG14_06305)	-	1312152..1313147 (-)	996	WP_245054829.1	PDZ domain-containing protein	-
MPG14_RS06310 (MPG14_06310)	-	1313147..1313440 (-)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
MPG14_RS06315 (MPG14_06315)	panD	1313451..1313801 (-)	351	WP_245053742.1	aspartate 1-decarboxylase	-
MPG14_RS06320 (MPG14_06320)	-	1313791..1316013 (-)	2223	WP_245053744.1	ATP-dependent Clp protease ATP-binding subunit	-
MPG14_RS06325 (MPG14_06325)	-	1316013..1316288 (-)	276	WP_000784960.1	ATP-dependent Clp protease adaptor ClpS	-
MPG14_RS06330 (MPG14_06330)	-	1316308..1316721 (-)	414	WP_187926617.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39898.85 Da
• Isoelectric Point: 8.8165

>NTDB_id=666881 MPG14_RS06300 WP_245053740.1 1311091..1312146(-) (comB6) [Helicobacter pylori strain Hpfe078]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALMFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTQPASSPISTSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=666881 MPG14_RS06300 WP_245053740.1 1311091..1312146(-) (comB6) [Helicobacter pylori strain Hpfe078]
ATGAAAAATGACGCTTATGAGATCATCCTTTCTTGGTTTATCACGCCTCTCACAGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCACAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGTGCTAGCGCGCTAACAGAAGCGTTAATGTTTGTGGGGTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCACCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGCT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGCTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCAACCCGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGCGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.296	100	0.963