Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPG14_RS06290 Genome accession   NZ_CP094102
Coordinates   1310210..1310953 (-) Length   247 a.a.
NCBI ID   WP_000660524.1    Uniprot ID   A0AAI8F143
Organism   Helicobacter pylori strain Hpfe078     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1305210..1315953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG14_RS06270 (MPG14_06270) gmd 1305477..1306622 (-) 1146 WP_245053734.1 GDP-mannose 4,6-dehydratase -
  MPG14_RS06275 (MPG14_06275) - 1306636..1308048 (-) 1413 WP_245053736.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG14_RS06280 (MPG14_06280) - 1308118..1309255 (-) 1138 Protein_1231 DNA type IV secretion system protein ComB10 -
  MPG14_RS06285 (MPG14_06285) comB9 1309248..1310210 (-) 963 WP_245053738.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG14_RS06290 (MPG14_06290) comB8 1310210..1310953 (-) 744 WP_000660524.1 virB8 family protein Machinery gene
  MPG14_RS06295 (MPG14_06295) comB7 1310950..1311075 (-) 126 WP_001217874.1 hypothetical protein Machinery gene
  MPG14_RS06300 (MPG14_06300) comB6 1311091..1312146 (-) 1056 WP_245053740.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG14_RS06305 (MPG14_06305) - 1312152..1313147 (-) 996 WP_245054829.1 PDZ domain-containing protein -
  MPG14_RS06310 (MPG14_06310) - 1313147..1313440 (-) 294 WP_000347922.1 YbaB/EbfC family nucleoid-associated protein -
  MPG14_RS06315 (MPG14_06315) panD 1313451..1313801 (-) 351 WP_245053742.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28684.91 Da        Isoelectric Point: 8.9546

>NTDB_id=666879 MPG14_RS06290 WP_000660524.1 1310210..1310953(-) (comB8) [Helicobacter pylori strain Hpfe078]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=666879 MPG14_RS06290 WP_000660524.1 1310210..1310953(-) (comB8) [Helicobacter pylori strain Hpfe078]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGGAACCGTTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATTGTTTTAATCAGTGTTCTACCCCTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAGGATTTGATCAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCCATTGCGGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.166

100

0.972