Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG782_RS11205 Genome accession   NZ_CP108800
Coordinates   2551371..2553302 (+) Length   643 a.a.
NCBI ID   WP_406449850.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00876     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2546371..2558302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG782_RS11170 (OG782_11180) - 2546581..2546814 (-) 234 WP_406449843.1 type II toxin-antitoxin system VapB family antitoxin -
  OG782_RS11190 (OG782_11200) - 2547657..2547956 (+) 300 WP_406449845.1 YtxH domain-containing protein -
  OG782_RS11195 (OG782_11205) - 2548024..2549469 (+) 1446 WP_406449847.1 FGGY family carbohydrate kinase -
  OG782_RS11200 (OG782_11210) rcrP 2549638..2551371 (+) 1734 WP_406449848.1 ABC transporter ATP-binding protein Regulator
  OG782_RS11205 (OG782_11215) rcrQ 2551371..2553302 (+) 1932 WP_406449850.1 ABC transporter ATP-binding protein Regulator
  OG782_RS11210 (OG782_11220) - 2553357..2554490 (-) 1134 WP_406449852.1 RNA polymerase sigma factor -
  OG782_RS11215 (OG782_11225) dnaG 2554702..2556606 (-) 1905 WP_406449854.1 DNA primase -

Sequence

Protein


Download         Length: 643 a.a.        Molecular weight: 69349.67 Da        Isoelectric Point: 5.2096

>NTDB_id=666873 OG782_RS11205 WP_406449850.1 2551371..2553302(+) (rcrQ) [Streptomyces sp. NBC_00876]
MAGPGGRMMAGGAPTERSMDFKGSSKRLLKRFAAEKSTLYLMLVAVALSVALSVVGPKILGKATDLVFAGVVGRGMDAGT
TKEQAVEGLRKSNSGLADMLSKVDFTPGQGMDFDAIGHVLLVALAVYVGAGLLMLVSTRLSIRVINRVIFQMREDIQTKL
SRLPLSYFDRAKRGEVLSRATNDIDNISQTMQQTMGQLINSLLTIVGVLVMMFWISPLLALVALVTVPLSVAVATKVGKR
SQPQFVQQWKVTGKLNAHIEEMYTGHTLVKVFGRQEESARDFAEQNDALYEAGFKAQFNSGIMQPLMMFVSNLNYVLIAV
VGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQDADPAKGEGEHPEELRGSVSL
EHVSFRYDPEKPLIEDLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDIAKMSRDDLRSGIGMVLQD
TWLFGGTIAENIAYGASGDVTREQVEEAARAAHADRFIRTLPDGYDTRIDDEGSGVSAGEKQLITIARAFLSDPVILVLD
EATSSVDTRTEVLIQKAMAGLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDELLEARGAYARLYAAQFAQAVA
EVD

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=666873 OG782_RS11205 WP_406449850.1 2551371..2553302(+) (rcrQ) [Streptomyces sp. NBC_00876]
ATGGCCGGGCCTGGCGGACGCATGATGGCGGGCGGGGCGCCGACCGAGCGGTCCATGGACTTCAAGGGGTCCTCGAAGCG
GCTGTTGAAGCGCTTCGCCGCGGAGAAGTCCACGCTGTACCTGATGCTGGTGGCCGTGGCGCTGAGCGTGGCGCTTTCGG
TGGTCGGCCCGAAGATCCTCGGCAAGGCCACCGACCTGGTGTTCGCCGGAGTCGTCGGCCGGGGGATGGACGCGGGGACG
ACCAAGGAGCAGGCCGTCGAGGGCCTGCGCAAGAGCAACAGCGGTCTGGCCGACATGCTCTCCAAGGTGGACTTCACCCC
GGGGCAGGGCATGGACTTCGACGCGATCGGCCATGTGCTGCTGGTCGCGCTGGCCGTGTACGTCGGTGCCGGGCTGCTGA
TGCTGGTGTCCACGCGGCTGTCGATCCGGGTGATCAACCGGGTCATCTTCCAGATGCGTGAGGACATCCAGACCAAGCTG
TCGCGGCTTCCCCTGTCGTACTTCGACCGGGCCAAGCGCGGCGAGGTGCTGAGCCGGGCGACGAACGACATCGACAACAT
CTCGCAGACGATGCAGCAGACGATGGGCCAGCTCATCAACTCGCTGCTGACGATCGTCGGCGTGCTGGTCATGATGTTCT
GGATCTCGCCGCTGCTGGCGCTGGTCGCACTGGTGACGGTGCCGCTTTCGGTGGCCGTGGCCACGAAGGTCGGCAAGCGT
TCGCAGCCGCAGTTCGTCCAGCAGTGGAAGGTGACGGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGGCACAC
CCTGGTGAAGGTCTTCGGGCGGCAGGAGGAGTCCGCGCGGGACTTCGCCGAGCAGAACGACGCGCTGTACGAGGCCGGGT
TCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTCTCGAACCTGAACTATGTGCTGATCGCCGTC
GTCGGCGGGCTGCGGGTCGCCTCCGGTGCGCTGTCGATCGGTGATGTGCAGGCCTTCATCCAGTACTCGCGGCAGTTCTC
CATGCCGCTGACCCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCCGGGGTGGCGTCGGCGGAGCGGATCTTCGAGCTGC
TGGACGCCGAGGAGCAGGACGCCGACCCCGCGAAGGGCGAGGGCGAGCACCCCGAGGAGCTGCGCGGCAGTGTCTCACTG
GAGCACGTGTCGTTCCGCTACGACCCGGAGAAGCCGCTCATCGAGGACCTGTCGCTGAGCGTCGAGCCGGGCCACACCGT
CGCGATCGTCGGTCCGACCGGGGCCGGCAAGACGACGCTGGTCAATCTGCTGATGCGCTTCTACGAGGTGACCGGCGGCC
GGATCGCCCTCGACGGGGTCGACATCGCGAAGATGTCGCGCGACGACCTGCGCTCGGGGATCGGCATGGTCCTCCAGGAC
ACCTGGCTGTTCGGCGGGACCATCGCGGAGAACATCGCCTACGGCGCCTCGGGCGACGTGACCCGGGAGCAGGTCGAGGA
AGCGGCGCGGGCGGCCCACGCCGACCGCTTCATCCGTACGCTTCCCGACGGTTACGACACCCGGATCGACGACGAGGGCT
CCGGTGTCAGCGCGGGCGAGAAGCAGCTCATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATACTGGTGCTCGAC
GAGGCGACCAGCTCCGTCGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGGGCCTGGCCCACGGCCGTACGAG
CTTCGTGATCGCGCACCGGCTCTCCACCATCCGGGATGCCGACGTCATCCTGGTGATGGAGAACGGGTCGATCGTCGAGC
AGGGCACGCACGACGAACTGCTGGAGGCGCGGGGCGCGTACGCCCGGCTGTACGCCGCGCAGTTCGCCCAGGCGGTCGCC
GAGGTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(57-350)

ABC transporter (ABC_tran)

(415-564)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.486

96.89

0.383