Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG14_RS01575 Genome accession   NZ_CP094102
Coordinates   332148..332552 (+) Length   134 a.a.
NCBI ID   WP_219035801.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe078     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 327148..337552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG14_RS01540 (MPG14_01540) - 327321..328259 (-) 939 WP_245054318.1 tetraacyldisaccharide 4'-kinase -
  MPG14_RS01545 (MPG14_01545) - 328256..329038 (-) 783 WP_245054319.1 NAD+ synthase -
  MPG14_RS01555 (MPG14_01555) ilvC 329287..330279 (+) 993 WP_245054320.1 ketol-acid reductoisomerase -
  MPG14_RS01560 (MPG14_01560) minD 330303..331109 (+) 807 WP_096396692.1 septum site-determining protein MinD -
  MPG14_RS01565 (MPG14_01565) minE 331106..331339 (+) 234 WP_021304603.1 cell division topological specificity factor MinE -
  MPG14_RS01570 (MPG14_01570) dprA 331351..332151 (+) 801 WP_000840083.1 DNA-processing protein DprA Machinery gene
  MPG14_RS01575 (MPG14_01575) dprB 332148..332552 (+) 405 WP_219035801.1 Holliday junction resolvase RuvX Machinery gene
  MPG14_RS01580 (MPG14_01580) - 332685..333554 (+) 870 WP_245054322.1 tetratricopeptide repeat protein -
  MPG14_RS01585 (MPG14_01585) - 333682..334020 (+) 339 WP_000699911.1 hypothetical protein -
  MPG14_RS01590 (MPG14_01590) - 334004..334564 (+) 561 WP_245054324.1 hypothetical protein -
  MPG14_RS01595 (MPG14_01595) - 334575..335075 (+) 501 WP_245054325.1 glycoside hydrolase family protein -
  MPG14_RS07795 - 335095..335256 (+) 162 Protein_317 lysozyme -
  MPG14_RS01600 (MPG14_01600) - 335582..335963 (+) 382 Protein_318 DUF1294 domain-containing protein -
  MPG14_RS01605 (MPG14_01605) - 335963..336748 (+) 786 WP_245054326.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15311.92 Da        Isoelectric Point: 9.5327

>NTDB_id=666873 MPG14_RS01575 WP_219035801.1 332148..332552(+) (dprB) [Helicobacter pylori strain Hpfe078]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACKILERYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666873 MPG14_RS01575 WP_219035801.1 332148..332552(+) (dprB) [Helicobacter pylori strain Hpfe078]
GTGATTTTGGCATGCGATGTGGGGCTGAAGCGCATTGGGATCGCTATGCTTTTGAACGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAGCATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAAGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.212

98.507

0.948