Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG782_RS11200 Genome accession   NZ_CP108800
Coordinates   2549638..2551371 (+) Length   577 a.a.
NCBI ID   WP_406449848.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00876     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2544638..2556371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG782_RS11160 (OG782_11170) - 2544861..2545856 (-) 996 WP_406449839.1 hypothetical protein -
  OG782_RS11165 (OG782_11175) - 2546177..2546584 (-) 408 WP_406449841.1 PIN domain-containing protein -
  OG782_RS11170 (OG782_11180) - 2546581..2546814 (-) 234 WP_406449843.1 type II toxin-antitoxin system VapB family antitoxin -
  OG782_RS11190 (OG782_11200) - 2547657..2547956 (+) 300 WP_406449845.1 YtxH domain-containing protein -
  OG782_RS11195 (OG782_11205) - 2548024..2549469 (+) 1446 WP_406449847.1 FGGY family carbohydrate kinase -
  OG782_RS11200 (OG782_11210) rcrP 2549638..2551371 (+) 1734 WP_406449848.1 ABC transporter ATP-binding protein Regulator
  OG782_RS11205 (OG782_11215) rcrQ 2551371..2553302 (+) 1932 WP_406449850.1 ABC transporter ATP-binding protein Regulator
  OG782_RS11210 (OG782_11220) - 2553357..2554490 (-) 1134 WP_406449852.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62623.67 Da        Isoelectric Point: 4.9709

>NTDB_id=666872 OG782_RS11200 WP_406449848.1 2549638..2551371(+) (rcrP) [Streptomyces sp. NBC_00876]
MLIKLLRAYLGPYKKPIALLVVFQLLQTCATLYLPTLNADIIDNGVVQGDTSYILQYGGVMIVVSIAQVICNIGAVYIGA
RTAAALGRDVRASVFDRVQSFSARELGRFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVRKMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDGYEEERFRGANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMEIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETDSSVVP
PVNPVRELTVQGHLEVRGADFRYPGAEEPVLRSVDLVARAGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDASDEELWHALEIAQAKEFVEGLENGLDAPIAQGGTNVSGGQRQRL
SIARTLVQRPEIYLFDDSFSALDYATDAALRAALLRETAGATVVIVAQRVSTIREADRILVLDEGRVVGSGSHHELMEGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=666872 OG782_RS11200 WP_406449848.1 2549638..2551371(+) (rcrP) [Streptomyces sp. NBC_00876]
GTGCTCATAAAACTCCTGCGGGCCTATCTCGGTCCGTACAAGAAACCGATCGCGCTGCTGGTCGTCTTCCAGCTGCTGCA
GACCTGCGCCACTCTCTATCTGCCCACCCTGAACGCCGACATCATTGACAACGGTGTCGTCCAGGGGGACACGAGTTACA
TCCTCCAGTACGGCGGCGTGATGATCGTCGTCAGCATCGCCCAGGTGATCTGCAACATCGGGGCCGTCTACATCGGGGCC
CGCACCGCGGCCGCGCTCGGCCGCGATGTCCGGGCGTCGGTCTTCGACCGGGTGCAGTCCTTCTCCGCGCGTGAGCTCGG
ACGGTTCGGCGCGCCCTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGGTCCAGATGCTGGTCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTCCCGCTGTCCGCGGTG
CTGCTCGCGGTGGTGCCGGTCCTCGGCATCGCGGTGAGCCTCATCGTGCGGAAGATGCGCCCGCTGTTCCGGACGATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTCCGCGACG
GTTACGAGGAGGAGCGCTTCCGGGGCGCCAACACCGAACTGACGGACGTGGCGCTGTCCACGGGCCGGCTGATGGCACTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTGTCGTCGATCGCCGTCGTCTGGTTCGGTGCGCACCGCATCGACAGCGG
CGGGATGGAGATCGGTGCGCTGACGGCGTTCCTCTCCTATCTGATGCAGATCGTCATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGTGCCGAGCGCATCCAGGAGGTCCTGGAGACCGACTCCAGCGTGGTTCCG
CCCGTCAACCCGGTGCGGGAGCTCACTGTCCAAGGCCATCTTGAGGTGCGGGGTGCGGACTTCCGCTACCCCGGCGCCGA
GGAGCCGGTGCTGCGCTCGGTGGACCTGGTGGCACGGGCCGGCGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACCCTGCTCGGTCTCGTACCCCGGCTGTTCGACGTCACGGACGGCCAGGTGCTGGTCGACGGGACGGACGTACGG
ACACTGGATCCGGTGCTGCTGGCCAAGACCGTGAGCCTGGTCCCGCAGAAGCCGTACCTCTTCTCCGGGACGGTCGCGAC
GAATCTGCGGTACGGGAATCCGGACGCGTCCGACGAGGAGCTGTGGCACGCGCTGGAGATCGCGCAGGCCAAGGAGTTCG
TCGAAGGTCTGGAGAACGGGCTCGACGCACCGATCGCGCAGGGCGGCACGAACGTCTCCGGCGGGCAGCGCCAGCGGCTC
TCGATCGCCCGGACGCTGGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCACTGGACTACGCCACGGA
CGCCGCGCTGCGCGCGGCGCTGCTGCGGGAGACCGCCGGTGCGACCGTGGTGATCGTCGCGCAGCGGGTGTCCACCATCC
GCGAGGCGGACAGGATCCTCGTGCTGGACGAGGGCCGCGTGGTCGGCTCGGGCAGCCATCACGAGCTGATGGAAGGCAAT
GAGACATACCGGGAGATCGTTCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.759

100

0.4