Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   MPG14_RS00275 Genome accession   NZ_CP094102
Coordinates   62571..63146 (+) Length   191 a.a.
NCBI ID   WP_245054067.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe078     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 57571..68146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG14_RS00250 (MPG14_00250) uvrD 58262..60307 (+) 2046 WP_245054061.1 DNA helicase UvrD -
  MPG14_RS00255 (MPG14_00255) flgA 60304..60960 (+) 657 WP_245054063.1 flagellar basal body P-ring formation chaperone FlgA -
  MPG14_RS00260 (MPG14_00260) - 60970..61533 (+) 564 WP_000780125.1 UbiX family flavin prenyltransferase -
  MPG14_RS00265 (MPG14_00265) coaD 61533..62006 (+) 474 WP_154415682.1 pantetheine-phosphate adenylyltransferase -
  MPG14_RS00270 (MPG14_00270) tmk 62008..62583 (+) 576 WP_245054065.1 dTMP kinase -
  MPG14_RS00275 (MPG14_00275) comFC 62571..63146 (+) 576 WP_245054067.1 ComF family protein Machinery gene
  MPG14_RS00280 (MPG14_00280) - 63179..63565 (+) 387 Protein_54 VRR-NUC domain-containing protein -
  MPG14_RS00285 (MPG14_00285) - 63556..64323 (-) 768 WP_245054069.1 Eco47II family restriction endonuclease -
  MPG14_RS00290 (MPG14_00290) dcm 64292..65323 (-) 1032 WP_342370079.1 DNA (cytosine-5-)-methyltransferase -
  MPG14_RS07780 - 65376..65909 (+) 534 Protein_57 restriction endonuclease subunit S -
  MPG14_RS07785 - 65953..66516 (+) 564 WP_342370070.1 N-6 DNA methylase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21251.74 Da        Isoelectric Point: 8.8864

>NTDB_id=666870 MPG14_RS00275 WP_245054067.1 62571..63146(+) (comFC) [Helicobacter pylori strain Hpfe078]
MRCLTCLKPSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRASNAVSYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNTKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=666870 MPG14_RS00275 WP_245054067.1 62571..63146(+) (comFC) [Helicobacter pylori strain Hpfe078]
ATGCGTTGTTTGACTTGTTTGAAGCCTTCTTTTAAGCCTCTCTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTACTTTCTCAAAAAGCCGGTGCAGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCTATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTTCTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCTTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACACAAAAGCGCACTTTGCAATCGCTCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

95.288

100

0.953
  ctsW Campylobacter jejuni subsp. jejuni 81-176

36.598

100

0.372