Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | MPF96_RS00265 | Genome accession | NZ_CP094101 |
| Coordinates | 60681..61256 (+) | Length | 191 a.a. |
| NCBI ID | WP_245049118.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe079 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 55681..66256
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPF96_RS00240 (MPF96_00240) | uvrD | 56372..58417 (+) | 2046 | WP_245049112.1 | DNA helicase UvrD | - |
| MPF96_RS00245 (MPF96_00245) | flgA | 58414..59070 (+) | 657 | WP_245049114.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| MPF96_RS00250 (MPF96_00250) | - | 59080..59643 (+) | 564 | WP_033122203.1 | UbiX family flavin prenyltransferase | - |
| MPF96_RS00255 (MPF96_00255) | coaD | 59643..60116 (+) | 474 | WP_101006887.1 | pantetheine-phosphate adenylyltransferase | - |
| MPF96_RS00260 (MPF96_00260) | tmk | 60118..60693 (+) | 576 | WP_245049116.1 | dTMP kinase | - |
| MPF96_RS00265 (MPF96_00265) | comFC | 60681..61256 (+) | 576 | WP_245049118.1 | ComF family protein | Machinery gene |
| MPF96_RS00270 (MPF96_00270) | - | 61289..63331 (+) | 2043 | WP_245049121.1 | N-6 DNA methylase | - |
| MPF96_RS00275 (MPF96_00275) | - | 63328..63972 (+) | 645 | WP_245049123.1 | restriction endonuclease subunit S | - |
| MPF96_RS00280 (MPF96_00280) | - | 63947..64579 (+) | 633 | WP_245049125.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21371.04 Da Isoelectric Point: 9.4457
>NTDB_id=666850 MPF96_RS00265 WP_245049118.1 60681..61256(+) (comFC) [Helicobacter pylori strain Hpfe079]
MRCLTCLKLSFKPLCLNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRANNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSAHE
MRCLTCLKLSFKPLCLNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRANNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSAHE
Nucleotide
Download Length: 576 bp
>NTDB_id=666850 MPF96_RS00265 WP_245049118.1 60681..61256(+) (comFC) [Helicobacter pylori strain Hpfe079]
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTTAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCTGGCGCGGAATTTGTGAAAATCCTACAAGAAAAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCTGGGAAAAGCTTAG
AATTTCGTGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCTTAAAATACCTTAAAGCCCTAAACATCAAAGCGCACTTTGCAATCGCTCTTTG
CAGCGCGCATGAATGA
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTTAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCTGGCGCGGAATTTGTGAAAATCCTACAAGAAAAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCTGGGAAAAGCTTAG
AATTTCGTGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCTTAAAATACCTTAAAGCCCTAAACATCAAAGCGCACTTTGCAATCGCTCTTTG
CAGCGCGCATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
94.241 |
100 |
0.942 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
37.629 |
100 |
0.382 |