Detailed information NTG0666833

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG36_RS00715
• Genome accession: NZ_CP094099
• Coordinates: 151997..152962 (+)
• Length: 321 a.a.
• NCBI ID: WP_245017100.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe080
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 146997..157962

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG36_RS00685 (MPG36_00685)	panD	148406..148756 (+)	351	WP_245017098.1	aspartate 1-decarboxylase	-
MPG36_RS00690 (MPG36_00690)	-	148767..149060 (+)	294	WP_131128566.1	YbaB/EbfC family nucleoid-associated protein	-
MPG36_RS00695 (MPG36_00695)	-	149060..150055 (+)	996	WP_245017419.1	PDZ domain-containing protein	-
MPG36_RS00700 (MPG36_00700)	comB6	150061..151116 (+)	1056	WP_245017420.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG36_RS00705 (MPG36_00705)	comB7	151132..151257 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPG36_RS00710 (MPG36_00710)	comB8	151254..151997 (+)	744	WP_245017099.1	virB8 family protein	Machinery gene
MPG36_RS00715 (MPG36_00715)	comB9	151997..152962 (+)	966	WP_245017100.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG36_RS00720 (MPG36_00720)	comB10	152955..154091 (+)	1137	WP_245017101.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG36_RS00725 (MPG36_00725)	-	154161..155573 (+)	1413	WP_245017102.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG36_RS00730 (MPG36_00730)	gmd	155587..156732 (+)	1146	WP_017283482.1	GDP-mannose 4,6-dehydratase	-
MPG36_RS00735 (MPG36_00735)	-	156725..157657 (+)	933	WP_171929917.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 36993.55 Da
• Isoelectric Point: 9.4585

>NTDB_id=666833 MPG36_RS00715 WP_245017100.1 151997..152962(+) (comB9) [Helicobacter pylori strain Hpfe080]
MRKVLYALVGFLLVFSALKADDFLEEANETAPVNLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILFIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKAPTNNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKS
KLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRSGKDYLCIRFIKKGKD
E

Nucleotide

• Length: 966 bp

>NTDB_id=666833 MPG36_RS00715 WP_245017100.1 151997..152962(+) (comB9) [Helicobacter pylori strain Hpfe080]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGTTTTTAGTGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGTGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTATTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAGAG
TAACGATCGTATTTTGTTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCACAAAACAAAGAAAATACCCTTGAAAAGGCTCCCACAAACAATAACAAACCATT
AAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGCGATAACACTAATGCAATGAAAATCGTTAAAA
AAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCC
AAACTCTCTTTGATGCCTGAAGAAATTTTCAACGACAAGCAATTCACTTATTTCAAATTTGATAAAAAATTAGCGCTCTC
TAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACAAGGATTGTGGGCGATTACATTATCG
CTGAAGATGTTTCGGCTAAATGGACTTTAAGATCGGGCAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	91.718	100	0.931