Detailed information NTG0666830

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: MPG36_RS00700
• Genome accession: NZ_CP094099
• Coordinates: 150061..151116 (+)
• Length: 351 a.a.
• NCBI ID: WP_245017420.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe080
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 145061..156116

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG36_RS00670 (MPG36_00670)	-	145491..145904 (+)	414	WP_001023005.1	universal stress protein	-
MPG36_RS00675 (MPG36_00675)	-	145919..146194 (+)	276	WP_180631755.1	ATP-dependent Clp protease adaptor ClpS	-
MPG36_RS00680 (MPG36_00680)	-	146194..148416 (+)	2223	WP_245017097.1	ATP-dependent Clp protease ATP-binding subunit	-
MPG36_RS00685 (MPG36_00685)	panD	148406..148756 (+)	351	WP_245017098.1	aspartate 1-decarboxylase	-
MPG36_RS00690 (MPG36_00690)	-	148767..149060 (+)	294	WP_131128566.1	YbaB/EbfC family nucleoid-associated protein	-
MPG36_RS00695 (MPG36_00695)	-	149060..150055 (+)	996	WP_245017419.1	PDZ domain-containing protein	-
MPG36_RS00700 (MPG36_00700)	comB6	150061..151116 (+)	1056	WP_245017420.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG36_RS00705 (MPG36_00705)	comB7	151132..151257 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPG36_RS00710 (MPG36_00710)	comB8	151254..151997 (+)	744	WP_245017099.1	virB8 family protein	Machinery gene
MPG36_RS00715 (MPG36_00715)	comB9	151997..152962 (+)	966	WP_245017100.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG36_RS00720 (MPG36_00720)	comB10	152955..154091 (+)	1137	WP_245017101.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG36_RS00725 (MPG36_00725)	-	154161..155573 (+)	1413	WP_245017102.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39917.93 Da
• Isoelectric Point: 8.8189

>NTDB_id=666830 MPG36_RS00700 WP_245017420.1 150061..151116(+) (comB6) [Helicobacter pylori strain Hpfe080]
MRNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASVLTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSTRESAIKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=666830 MPG36_RS00700 WP_245017420.1 150061..151116(+) (comB6) [Helicobacter pylori strain Hpfe080]
ATGAGAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACAGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCACAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGTGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTGAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTCTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCTGCTTCCTCTCCTATTTCTACTTCTACAAGAGAAAGTGCCATTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.296	100	0.963