Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   MPG36_RS00275 Genome accession   NZ_CP094099
Coordinates   62898..63473 (+) Length   191 a.a.
NCBI ID   WP_245017059.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe080     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 57898..68473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG36_RS00250 (MPG36_00250) uvrD 58589..60634 (+) 2046 WP_245017054.1 DNA helicase UvrD -
  MPG36_RS00255 (MPG36_00255) flgA 60631..61287 (+) 657 WP_245017055.1 flagellar basal body P-ring formation chaperone FlgA -
  MPG36_RS00260 (MPG36_00260) - 61297..61860 (+) 564 WP_245017056.1 UbiX family flavin prenyltransferase -
  MPG36_RS00265 (MPG36_00265) coaD 61860..62333 (+) 474 WP_245017057.1 pantetheine-phosphate adenylyltransferase -
  MPG36_RS00270 (MPG36_00270) tmk 62335..62910 (+) 576 WP_245017058.1 dTMP kinase -
  MPG36_RS00275 (MPG36_00275) comFC 62898..63473 (+) 576 WP_245017059.1 ComF family protein Machinery gene
  MPG36_RS00280 (MPG36_00280) - 63506..65536 (+) 2031 Protein_54 N-6 DNA methylase -
  MPG36_RS00285 (MPG36_00285) - 65533..66738 (+) 1206 WP_245017060.1 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21368.03 Da        Isoelectric Point: 9.0901

>NTDB_id=666829 MPG36_RS00275 WP_245017059.1 62898..63473(+) (comFC) [Helicobacter pylori strain Hpfe080]
MRCLTCLKLSFKPLCLNCLKDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNTISYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=666829 MPG36_RS00275 WP_245017059.1 62898..63473(+) (comFC) [Helicobacter pylori strain Hpfe080]
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTTAAATTGCTTGAAAGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGCTTAAGGGCTACTAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAACAACCCACGGGATTTCACCTTCAAAGGCGATGAGAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCAATCGCTCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

94.241

100

0.942
  ctsW Campylobacter jejuni subsp. jejuni 81-176

36.458

100

0.366