Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG69_RS05530 Genome accession   NZ_CP094096
Coordinates   1170541..1170945 (-) Length   134 a.a.
NCBI ID   WP_245055346.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe082     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1165541..1175945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG69_RS05500 (MPG69_05500) - 1165715..1166914 (+) 1200 WP_245055338.1 hypothetical protein -
  MPG69_RS05505 (MPG69_05505) - 1166978..1168054 (-) 1077 WP_245055340.1 site-specific integrase -
  MPG69_RS05510 (MPG69_05510) - 1168490..1168891 (-) 402 WP_245055342.1 glycoside hydrolase family protein -
  MPG69_RS05515 (MPG69_05515) - 1168999..1169559 (-) 561 WP_245055344.1 hypothetical protein -
  MPG69_RS05520 (MPG69_05520) - 1169543..1169881 (-) 339 WP_220906329.1 hypothetical protein -
  MPG69_RS05525 (MPG69_05525) - 1170071..1170506 (-) 436 Protein_1081 tetratricopeptide repeat protein -
  MPG69_RS05530 (MPG69_05530) dprB 1170541..1170945 (-) 405 WP_245055346.1 Holliday junction resolvase RuvX Machinery gene
  MPG69_RS05535 (MPG69_05535) dprA 1170942..1171742 (-) 801 WP_245055348.1 DNA-processing protein DprA Machinery gene
  MPG69_RS05540 (MPG69_05540) minE 1171754..1171987 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG69_RS05545 (MPG69_05545) minD 1171984..1172790 (-) 807 WP_001019098.1 septum site-determining protein MinD -
  MPG69_RS05550 (MPG69_05550) ilvC 1172809..1173801 (-) 993 WP_245055350.1 ketol-acid reductoisomerase -
  MPG69_RS05560 (MPG69_05560) - 1174050..1174832 (+) 783 WP_245055352.1 NAD+ synthase -
  MPG69_RS05565 (MPG69_05565) - 1174829..1175767 (+) 939 WP_245055354.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15197.71 Da        Isoelectric Point: 9.1648

>NTDB_id=666798 MPG69_RS05530 WP_245055346.1 1170541..1170945(-) (dprB) [Helicobacter pylori strain Hpfe082]
MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNAHIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILEHYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666798 MPG69_RS05530 WP_245055346.1 1170541..1170945(-) (dprB) [Helicobacter pylori strain Hpfe082]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGTGCTTTTAAATGGCGTTATTTTACCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGAAAGCCCAATGAAAGCTATGCGGACACGAACGCGCACATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCACTATTGCCAGCAGGTTTTGAAAAAGC
GTTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.697

98.507

0.933