Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   MPF97_RS00715 Genome accession   NZ_CP094093
Coordinates   152624..153586 (+) Length   320 a.a.
NCBI ID   WP_245102616.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe085     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 147624..158586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF97_RS00685 (MPF97_00685) panD 149045..149395 (+) 351 WP_245102612.1 aspartate 1-decarboxylase -
  MPF97_RS00690 (MPF97_00690) - 149406..149699 (+) 294 WP_000347923.1 YbaB/EbfC family nucleoid-associated protein -
  MPF97_RS00695 (MPF97_00695) - 149699..150694 (+) 996 WP_245103197.1 PDZ domain-containing protein -
  MPF97_RS00700 (MPF97_00700) comB6 150700..151755 (+) 1056 WP_154443589.1 P-type conjugative transfer protein TrbL Machinery gene
  MPF97_RS00705 (MPF97_00705) comB7 151771..151884 (+) 114 WP_245102614.1 comB7 lipoprotein Machinery gene
  MPF97_RS00710 (MPF97_00710) comB8 151881..152624 (+) 744 WP_015429416.1 virB8 family protein Machinery gene
  MPF97_RS00715 (MPF97_00715) comB9 152624..153586 (+) 963 WP_245102616.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPF97_RS00720 (MPF97_00720) comB10 153579..154715 (+) 1137 WP_245102618.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPF97_RS00725 (MPF97_00725) - 154785..156197 (+) 1413 WP_245102620.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPF97_RS00730 (MPF97_00730) gmd 156212..157357 (+) 1146 WP_245102622.1 GDP-mannose 4,6-dehydratase -
  MPF97_RS00735 (MPF97_00735) - 157350..158282 (+) 933 WP_245102624.1 GDP-L-fucose synthase -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 37016.54 Da        Isoelectric Point: 9.2071

>NTDB_id=666731 MPF97_RS00715 WP_245102616.1 152624..153586(+) (comB9) [Helicobacter pylori strain Hpfe085]
MRKVLYALVGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLENAPTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQRDYRALKSSQRKWYCLWICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide


Download         Length: 963 bp        

>NTDB_id=666731 MPF97_RS00715 WP_245102616.1 152624..153586(+) (comB9) [Helicobacter pylori strain Hpfe085]
ATGCGTAAGGTTTTATACGCTCTTGTGGGTTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAATGCCCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAGG
ACATTCAAAGAGACTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGTGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCACTCTCTAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTAGGCGATTACATTATCGCTG
AAGATGTTTCGGCTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(62-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

92.638

100

0.944