Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB6   Type   Machinery gene
Locus tag   MPF97_RS00700 Genome accession   NZ_CP094093
Coordinates   150700..151755 (+) Length   351 a.a.
NCBI ID   WP_154443589.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe085     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 145700..156755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF97_RS00665 (MPF97_00665) - 145825..146013 (-) 189 WP_245102608.1 hypothetical protein -
  MPF97_RS00670 (MPF97_00670) - 146125..146538 (+) 414 WP_001023005.1 universal stress protein -
  MPF97_RS00675 (MPF97_00675) - 146558..146833 (+) 276 WP_000784917.1 ATP-dependent Clp protease adaptor ClpS -
  MPF97_RS00680 (MPF97_00680) - 146833..149055 (+) 2223 WP_245102610.1 ATP-dependent Clp protease ATP-binding subunit -
  MPF97_RS00685 (MPF97_00685) panD 149045..149395 (+) 351 WP_245102612.1 aspartate 1-decarboxylase -
  MPF97_RS00690 (MPF97_00690) - 149406..149699 (+) 294 WP_000347923.1 YbaB/EbfC family nucleoid-associated protein -
  MPF97_RS00695 (MPF97_00695) - 149699..150694 (+) 996 WP_245103197.1 PDZ domain-containing protein -
  MPF97_RS00700 (MPF97_00700) comB6 150700..151755 (+) 1056 WP_154443589.1 P-type conjugative transfer protein TrbL Machinery gene
  MPF97_RS00705 (MPF97_00705) comB7 151771..151884 (+) 114 WP_245102614.1 comB7 lipoprotein Machinery gene
  MPF97_RS00710 (MPF97_00710) comB8 151881..152624 (+) 744 WP_015429416.1 virB8 family protein Machinery gene
  MPF97_RS00715 (MPF97_00715) comB9 152624..153586 (+) 963 WP_245102616.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPF97_RS00720 (MPF97_00720) comB10 153579..154715 (+) 1137 WP_245102618.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPF97_RS00725 (MPF97_00725) - 154785..156197 (+) 1413 WP_245102620.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 39815.79 Da        Isoelectric Point: 8.8165

>NTDB_id=666728 MPF97_RS00700 WP_154443589.1 150700..151755(+) (comB6) [Helicobacter pylori strain Hpfe085]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNLFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISASTRESTTKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=666728 MPF97_RS00700 WP_154443589.1 150700..151755(+) (comB6) [Helicobacter pylori strain Hpfe085]
ATGAAAAATGACGCTTATGAGATTATTCTTTCTTGGTTTATCACGCCTTTAACGGCGATTTTAGGGCGTTTTGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATCTTTTCAGCGCTAGTGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAATTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGTCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTGCTTCTACAAGAGAAAGCACTACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

TrbL/VirB6 plasmid conjugal transfer protein (TrbL)

(44-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB6 Helicobacter pylori 26695

96.581

100

0.966