Detailed information NTG0666669

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPF90_RS00720
• Genome accession: NZ_CP094090
• Coordinates: 149925..150890 (+)
• Length: 321 a.a.
• NCBI ID: WP_245023092.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe089
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 144925..155890

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPF90_RS00690 (MPF90_00690)	panD	146332..146682 (+)	351	WP_096524943.1	aspartate 1-decarboxylase	-
MPF90_RS00695 (MPF90_00695)	-	146693..146986 (+)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
MPF90_RS00700 (MPF90_00700)	-	146986..147981 (+)	996	WP_245023413.1	PDZ domain-containing protein	-
MPF90_RS00705 (MPF90_00705)	comB6	147989..149044 (+)	1056	WP_245023414.1	P-type conjugative transfer protein TrbL	Machinery gene
MPF90_RS00710 (MPF90_00710)	comB7	149060..149185 (+)	126	WP_231172561.1	comB7 lipoprotein	Machinery gene
MPF90_RS00715 (MPF90_00715)	comB8	149182..149925 (+)	744	WP_245023091.1	virB8 family protein	Machinery gene
MPF90_RS00720 (MPF90_00720)	comB9	149925..150890 (+)	966	WP_245023092.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPF90_RS00725 (MPF90_00725)	comB10	150883..152019 (+)	1137	WP_245023093.1	DNA type IV secretion system protein ComB10	Machinery gene
MPF90_RS00730 (MPF90_00730)	-	152089..153501 (+)	1413	WP_245023094.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPF90_RS00735 (MPF90_00735)	gmd	153516..154661 (+)	1146	WP_017283482.1	GDP-mannose 4,6-dehydratase	-
MPF90_RS00740 (MPF90_00740)	-	154654..155586 (+)	933	WP_180391370.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 36806.36 Da
• Isoelectric Point: 9.2454

>NTDB_id=666669 MPF90_RS00720 WP_245023092.1 149925..150890(+) (comB9) [Helicobacter pylori strain Hpfe089]
MRKVLCTLVGFLLVSSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLLFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQIQENTLEKAPTNNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKS
KLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRSGKDYLCIRFIKKGKD
E

Nucleotide

• Length: 966 bp

>NTDB_id=666669 MPF90_RS00720 WP_245023092.1 149925..150890(+) (comB9) [Helicobacter pylori strain Hpfe089]
ATGCGTAAGGTTTTATGCACTCTTGTGGGCTTTTTGTTGGTTTCTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTACTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAGAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAATTCAAGAAAATACCCTTGAAAAGGCTCCCACAAACAACAACAAACCCTT
AAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGTGATAACACTAATGCAATGAAAATCGTTAAAA
AAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCC
AAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAACAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTC
TAAATTCCCGGTGATTTACAAAGTCGTTGATGGCTATGATAACCCAGTGAATACTAGGATTGTGGGCGATTATATTATCG
CTGAAGATGTTTCGGCTAAATGGACTTTAAGATCGGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	90.491	100	0.919