Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | MPF90_RS00270 | Genome accession | NZ_CP094090 |
| Coordinates | 60655..61230 (+) | Length | 191 a.a. |
| NCBI ID | WP_245023050.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe089 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 55655..66230
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPF90_RS00245 (MPF90_00245) | uvrD | 56346..58391 (+) | 2046 | WP_245023047.1 | DNA helicase UvrD | - |
| MPF90_RS00250 (MPF90_00250) | flgA | 58388..59044 (+) | 657 | WP_245023048.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| MPF90_RS00255 (MPF90_00255) | - | 59054..59617 (+) | 564 | WP_029567589.1 | UbiX family flavin prenyltransferase | - |
| MPF90_RS00260 (MPF90_00260) | coaD | 59617..60090 (+) | 474 | WP_001169261.1 | pantetheine-phosphate adenylyltransferase | - |
| MPF90_RS00265 (MPF90_00265) | tmk | 60092..60667 (+) | 576 | WP_245023049.1 | dTMP kinase | - |
| MPF90_RS00270 (MPF90_00270) | comFC | 60655..61230 (+) | 576 | WP_245023050.1 | ComF family protein | Machinery gene |
| MPF90_RS00275 (MPF90_00275) | - | 61263..63302 (+) | 2040 | WP_245023051.1 | N-6 DNA methylase | - |
| MPF90_RS00280 (MPF90_00280) | - | 63299..64522 (+) | 1224 | WP_245023052.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21282.85 Da Isoelectric Point: 8.5556
>NTDB_id=666665 MPF90_RS00270 WP_245023050.1 60655..61230(+) (comFC) [Helicobacter pylori strain Hpfe089]
MRCLTCLELSFKPLCPNCLNDLPLSLRVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGCLRATNAISYAGKSLEFRANNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLELSFKPLCPNCLNDLPLSLRVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGCLRATNAISYAGKSLEFRANNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=666665 MPF90_RS00270 WP_245023050.1 60655..61230(+) (comFC) [Helicobacter pylori strain Hpfe089]
ATGCGTTGTTTAACTTGTTTGGAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAG
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCTCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGTGTTTAAGGGCTACTAATGCTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCACTTTGCAATCGCTCTTTG
CAGTGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGGAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAG
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCTCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGTGTTTAAGGGCTACTAATGCTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCACTTTGCAATCGCTCTTTG
CAGTGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
93.717 |
100 |
0.937 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |