Detailed information NTG0666604

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG64_RS00805
• Genome accession: NZ_CP094085
• Coordinates: 168238..169200 (+)
• Length: 320 a.a.
• NCBI ID: WP_245076413.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe095
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 163238..174200

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG64_RS00775 (MPG64_00775)	panD	164645..164995 (+)	351	WP_156608295.1	aspartate 1-decarboxylase	-
MPG64_RS00780 (MPG64_00780)	-	165006..165299 (+)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
MPG64_RS00785 (MPG64_00785)	-	165299..166294 (+)	996	WP_245077031.1	PDZ domain-containing protein	-
MPG64_RS00790 (MPG64_00790)	comB6	166302..167357 (+)	1056	WP_180419650.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG64_RS00795 (MPG64_00795)	comB7	167373..167498 (+)	126	WP_021307643.1	hypothetical protein	Machinery gene
MPG64_RS00800 (MPG64_00800)	comB8	167495..168238 (+)	744	WP_000660524.1	virB8 family protein	Machinery gene
MPG64_RS00805 (MPG64_00805)	comB9	168238..169200 (+)	963	WP_245076413.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG64_RS00810 (MPG64_00810)	comB10	169193..170329 (+)	1137	WP_245076415.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG64_RS00815 (MPG64_00815)	-	170395..171810 (+)	1416	WP_245076417.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG64_RS00820 (MPG64_00820)	gmd	171821..172966 (+)	1146	WP_245076419.1	GDP-mannose 4,6-dehydratase	-
MPG64_RS00825 (MPG64_00825)	-	172959..173891 (+)	933	WP_245076421.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36956.53 Da
• Isoelectric Point: 9.3412

>NTDB_id=666604 MPG64_RS00805 WP_245076413.1 168238..169200(+) (comB9) [Helicobacter pylori strain Hpfe095]
MRKVLYALVGFLLVSSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKAPTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKDYRALKSSQRKWYCLWICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=666604 MPG64_RS00805 WP_245076413.1 168238..169200(+) (comB9) [Helicobacter pylori strain Hpfe095]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGTTTCTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTATTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAATGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAAGGCCCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGACTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGTGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTTAATGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.331	100	0.941