Detailed information NTG0666601

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: MPG64_RS00790
• Genome accession: NZ_CP094085
• Coordinates: 166302..167357 (+)
• Length: 351 a.a.
• NCBI ID: WP_180419650.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe095
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 161302..172357

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG64_RS00760 (MPG64_00760)	-	161728..162141 (+)	414	WP_245076409.1	universal stress protein	-
MPG64_RS00765 (MPG64_00765)	-	162161..162436 (+)	276	WP_000784960.1	ATP-dependent Clp protease adaptor ClpS	-
MPG64_RS00770 (MPG64_00770)	-	162436..164655 (+)	2220	WP_245076411.1	ATP-dependent Clp protease ATP-binding subunit	-
MPG64_RS00775 (MPG64_00775)	panD	164645..164995 (+)	351	WP_156608295.1	aspartate 1-decarboxylase	-
MPG64_RS00780 (MPG64_00780)	-	165006..165299 (+)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
MPG64_RS00785 (MPG64_00785)	-	165299..166294 (+)	996	WP_245077031.1	PDZ domain-containing protein	-
MPG64_RS00790 (MPG64_00790)	comB6	166302..167357 (+)	1056	WP_180419650.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG64_RS00795 (MPG64_00795)	comB7	167373..167498 (+)	126	WP_021307643.1	hypothetical protein	Machinery gene
MPG64_RS00800 (MPG64_00800)	comB8	167495..168238 (+)	744	WP_000660524.1	virB8 family protein	Machinery gene
MPG64_RS00805 (MPG64_00805)	comB9	168238..169200 (+)	963	WP_245076413.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG64_RS00810 (MPG64_00810)	comB10	169193..170329 (+)	1137	WP_245076415.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG64_RS00815 (MPG64_00815)	-	170395..171810 (+)	1416	WP_245076417.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39811.71 Da
• Isoelectric Point: 8.8165

>NTDB_id=666601 MPG64_RS00790 WP_180419650.1 166302..167357(+) (comB6) [Helicobacter pylori strain Hpfe095]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSSVSTSTRESASKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=666601 MPG64_RS00790 WP_180419650.1 166302..167357(+) (comB6) [Helicobacter pylori strain Hpfe095]
ATGAAAAATGACGCTTATGAAATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGCT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTTATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATACATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTACTTCTACAAGAGAAAGCGCCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.721	100	0.977