Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   MPG64_RS00290 Genome accession   NZ_CP094085
Coordinates   64182..64757 (+) Length   191 a.a.
NCBI ID   WP_245076320.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe095     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 59182..69757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG64_RS00265 (MPG64_00265) uvrD 59873..61918 (+) 2046 WP_245076314.1 DNA helicase UvrD -
  MPG64_RS00270 (MPG64_00270) flgA 61915..62571 (+) 657 WP_245076316.1 flagellar basal body P-ring formation chaperone FlgA -
  MPG64_RS00275 (MPG64_00275) - 62581..63144 (+) 564 WP_000780122.1 UbiX family flavin prenyltransferase -
  MPG64_RS00280 (MPG64_00280) coaD 63144..63617 (+) 474 WP_001169259.1 pantetheine-phosphate adenylyltransferase -
  MPG64_RS00285 (MPG64_00285) tmk 63619..64194 (+) 576 WP_245076318.1 dTMP kinase -
  MPG64_RS00290 (MPG64_00290) comFC 64182..64757 (+) 576 WP_245076320.1 ComF family protein Machinery gene
  MPG64_RS00295 (MPG64_00295) - 64790..65178 (+) 389 Protein_56 VRR-NUC domain-containing protein -
  MPG64_RS00300 (MPG64_00300) - 65165..65926 (-) 762 WP_245076322.1 Eco47II family restriction endonuclease -
  MPG64_RS00305 (MPG64_00305) dcm 65895..66926 (-) 1032 WP_128013898.1 DNA (cytosine-5-)-methyltransferase -
  MPG64_RS00310 (MPG64_00310) - 66934..67530 (+) 597 WP_245076324.1 restriction endonuclease subunit S -
  MPG64_RS00315 (MPG64_00315) - 67557..68099 (+) 543 WP_245076326.1 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21293.86 Da        Isoelectric Point: 8.8864

>NTDB_id=666600 MPG64_RS00290 WP_245076320.1 64182..64757(+) (comFC) [Helicobacter pylori strain Hpfe095]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLDGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGTEFVKILQEKG
LNAPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRAANTISYAGKSLEFRANNPRDFTFKGDETLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=666600 MPG64_RS00290 WP_245076320.1 64182..64757(+) (comFC) [Helicobacter pylori strain Hpfe095]
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAACTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGATGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CACTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCACGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGAACGCTCCCCTTTATGGTATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTGCTAATACTATTTCGTATGCTGGGAAAAGCTTAG
AATTTCGTGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAACTTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAGGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCACTTTGCAATCGCTCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

94.764

100

0.948
  ctsW Campylobacter jejuni subsp. jejuni 81-176

36.458

100

0.366