Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG844_RS28910 Genome accession   NZ_CP108788
Coordinates   6307236..6308648 (-) Length   470 a.a.
NCBI ID   WP_329209821.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00887     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6302236..6313648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG844_RS28885 (OG844_28845) - 6302463..6303155 (-) 693 WP_406394205.1 hypothetical protein -
  OG844_RS28890 (OG844_28850) - 6303143..6303727 (-) 585 WP_406394207.1 SigE family RNA polymerase sigma factor -
  OG844_RS28895 (OG844_28855) - 6303910..6304812 (-) 903 WP_406394208.1 A/G-specific adenine glycosylase -
  OG844_RS28900 (OG844_28860) - 6305094..6305909 (+) 816 WP_406396292.1 hypothetical protein -
  OG844_RS28905 (OG844_28865) disA 6306031..6307155 (-) 1125 WP_406394209.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG844_RS28910 (OG844_28870) radA/sms 6307236..6308648 (-) 1413 WP_329209821.1 DNA repair protein RadA Machinery gene
  OG844_RS28915 (OG844_28875) - 6308843..6310585 (+) 1743 WP_406394211.1 BACON domain-containing protein -
  OG844_RS28920 (OG844_28880) - 6310714..6311553 (-) 840 WP_406394212.1 hypothetical protein -
  OG844_RS28925 (OG844_28885) - 6311595..6312542 (+) 948 WP_329209827.1 Ppx/GppA phosphatase family protein -
  OG844_RS28930 (OG844_28890) - 6312625..6313449 (+) 825 WP_406394214.1 sugar phosphate isomerase/epimerase family protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49579.66 Da        Isoelectric Point: 8.2515

>NTDB_id=666566 OG844_RS28910 WP_329209821.1 6307236..6308648(-) (radA/sms) [Streptomyces sp. NBC_00887]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAAVPIGQVDSRQATARSTGVSE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTAEESASQVRMRADRIRAINDHLYLAAETDLSAV
LGHLDAVKPSLLVLDSVQTVASPEIEGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAYRLGFKHALVPRDPGQVPAGMKVTEVADMGDALRVLPRRSRSDGPQEDGARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=666566 OG844_RS28910 WP_329209821.1 6307236..6308648(-) (radA/sms) [Streptomyces sp. NBC_00887]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAATGCGGCTGGACGACCGCCAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCCTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCTGCCGTGCGCACCACGGCCGCGG
GCCGCGTCTCCACCGCCGCCGTGCCCATCGGGCAGGTCGACAGCCGCCAGGCCACGGCGCGCTCGACCGGGGTGAGTGAG
CTGGACCGGGTGCTCGGAGGCGGGCTCGTGCCGGGGGCCGTCGTGCTGCTCGCGGGCGAACCGGGCGTCGGGAAGTCGAC
GCTGCTGCTGGACGTGGCGGCGAAGGCCGCGAGCGACGAACACCGCACGCTGTACGTCACGGCGGAGGAGTCCGCGAGCC
AGGTGCGGATGCGGGCCGACCGGATCAGGGCGATCAACGACCACCTGTACCTGGCTGCGGAGACCGACCTGTCGGCTGTT
CTCGGCCATCTGGACGCGGTCAAGCCGTCCCTCCTCGTCCTCGACTCCGTACAGACCGTCGCCTCGCCGGAGATCGAGGG
CGCACCCGGCGGCATGGCGCAGGTCCGAGAGGTCGCGGGCGCCCTCATCCGGGCCTCGAAGGAGCGCGGCATGTCGACGC
TCCTGGTCGGCCATGTCACCAAGGACGGCGCGATCGCGGGGCCGCGGCTCCTGGAGCACCTCGTCGATGTCGTGCTGTCC
TTCGAGGGCGACCGGCACGCCCGCCTCCGTCTGGTACGGGGCGTCAAGAACAGGTACGGGGCCACGGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGACTCGCCGATCCTTCCGGCCTCTTCCTCACCCGGCGCGACGAGCCGGTTC
CCGGCACCTGCCTGACCGTCACCCTGGAGGGCAAGCGCCCTCTCGTCGCGGAGGTCCAGGCGCTGACCGTCGATTCGCAG
ATCCCCTCGCCCCGGCGCACGACCTCGGGCCTGGAGACCTCCCGCGTCTCGATGATGCTGGCGGTTCTCGAGCAGCGCGG
CAGAATCAGCGCACTCGGCAAGCGTGACATCTACAGCGCGACGGTCGGCGGCGTGAAGCTCACCGAGCCCGCCGCGGACC
TCGCGATCGCGCTGGCCCTGGCCAGCGCTGCGAGCGACACCCCCCTCCCGAAGAACCTCGTCGCGATCGGCGAAGTGGGC
CTCGCCGGGGAGGTCAGAAGGGTTACGGGGGTCCAGCGCAGGCTCGCCGAGGCGTACCGTCTCGGGTTCAAGCACGCCCT
GGTCCCGAGGGACCCGGGGCAGGTCCCCGCCGGTATGAAGGTCACGGAAGTCGCCGACATGGGTGATGCTCTGAGAGTCC
TTCCGCGCAGGTCTCGCTCGGACGGACCACAGGAGGACGGCGCACGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(83-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.709

96.383

0.421
  radA Streptococcus pneumoniae Rx1

43.357

91.277

0.396
  radA Streptococcus pneumoniae D39

43.357

91.277

0.396
  radA Streptococcus pneumoniae R6

43.357

91.277

0.396
  radA Streptococcus pneumoniae TIGR4

43.357

91.277

0.396
  radA Streptococcus mitis SK321

43.357

91.277

0.396
  radA Streptococcus mitis NCTC 12261

43.357

91.277

0.396