Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | MPG38_RS00275 | Genome accession | NZ_CP094080 |
| Coordinates | 62620..63195 (+) | Length | 191 a.a. |
| NCBI ID | WP_245101262.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe099 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 57620..68195
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG38_RS00250 (MPG38_00250) | uvrD | 58311..60356 (+) | 2046 | WP_245101260.1 | DNA helicase UvrD | - |
| MPG38_RS00255 (MPG38_00255) | flgA | 60353..61009 (+) | 657 | WP_245101261.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| MPG38_RS00260 (MPG38_00260) | - | 61019..61582 (+) | 564 | WP_120940935.1 | UbiX family flavin prenyltransferase | - |
| MPG38_RS00265 (MPG38_00265) | coaD | 61582..62055 (+) | 474 | WP_075645530.1 | pantetheine-phosphate adenylyltransferase | - |
| MPG38_RS00270 (MPG38_00270) | tmk | 62057..62632 (+) | 576 | WP_245085797.1 | dTMP kinase | - |
| MPG38_RS00275 (MPG38_00275) | comFC | 62620..63195 (+) | 576 | WP_245101262.1 | ComF family protein | Machinery gene |
| MPG38_RS00280 (MPG38_00280) | - | 63228..65267 (+) | 2040 | WP_245101263.1 | N-6 DNA methylase | - |
| MPG38_RS00285 (MPG38_00285) | - | 65264..66502 (+) | 1239 | WP_245101264.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21265.89 Da Isoelectric Point: 9.2796
>NTDB_id=666535 MPG38_RS00275 WP_245101262.1 62620..63195(+) (comFC) [Helicobacter pylori strain Hpfe099]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNAVSYAGKSLEFRANNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLSIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNAVSYAGKSLEFRANNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLSIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=666535 MPG38_RS00275 WP_245101262.1 62620..63195(+) (comFC) [Helicobacter pylori strain Hpfe099]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCATTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGTGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATCTAAAGCCCACTTACGGGCGTTTAAGGGCTACTAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCAAGGGATTTCACCTTCAAGGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAGCATCAAAGCACACTTTGCAATCGCTCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCATTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGTGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATCTAAAGCCCACTTACGGGCGTTTAAGGGCTACTAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCAAGGGATTTCACCTTCAAGGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAGCATCAAAGCACACTTTGCAATCGCTCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.288 |
100 |
0.953 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
35.938 |
100 |
0.361 |