Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | MPF83_RS00265 | Genome accession | NZ_CP094078 |
| Coordinates | 60358..60933 (+) | Length | 191 a.a. |
| NCBI ID | WP_245054076.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe101 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 55358..65933
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPF83_RS00240 (MPF83_00240) | uvrD | 56049..58094 (+) | 2046 | WP_245054070.1 | DNA helicase UvrD | - |
| MPF83_RS00245 (MPF83_00245) | flgA | 58091..58747 (+) | 657 | WP_245054072.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| MPF83_RS00250 (MPF83_00250) | - | 58757..59320 (+) | 564 | WP_245054074.1 | UbiX family flavin prenyltransferase | - |
| MPF83_RS00255 (MPF83_00255) | coaD | 59320..59793 (+) | 474 | WP_001169261.1 | pantetheine-phosphate adenylyltransferase | - |
| MPF83_RS00260 (MPF83_00260) | tmk | 59795..60370 (+) | 576 | WP_126130704.1 | dTMP kinase | - |
| MPF83_RS00265 (MPF83_00265) | comFC | 60358..60933 (+) | 576 | WP_245054076.1 | ComF family protein | Machinery gene |
| MPF83_RS00270 (MPF83_00270) | - | 60966..63005 (+) | 2040 | WP_245054078.1 | N-6 DNA methylase | - |
| MPF83_RS00275 (MPF83_00275) | - | 63002..63709 (+) | 708 | WP_245054080.1 | restriction endonuclease subunit S | - |
| MPF83_RS00280 (MPF83_00280) | - | 63736..64266 (+) | 531 | WP_245054082.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21378.02 Da Isoelectric Point: 9.2796
>NTDB_id=666494 MPF83_RS00265 WP_245054076.1 60358..60933(+) (comFC) [Helicobacter pylori strain Hpfe101]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRANNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKVHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRANNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKVHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=666494 MPF83_RS00265 WP_245054076.1 60358..60933(+) (comFC) [Helicobacter pylori strain Hpfe101]
ATGCGTTGTTTAACCTGTTTGAAACTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGTGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCTGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTCTTGCTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGTGCACTTTGCAATCGCGCTTTG
CAGCGCAGATGAATGA
ATGCGTTGTTTAACCTGTTTGAAACTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGTGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCTGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTCTTGCTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGTGCACTTTGCAATCGCGCTTTG
CAGCGCAGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.812 |
100 |
0.958 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.979 |
100 |
0.372 |