Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | MPG56_RS00265 | Genome accession | NZ_CP094076 |
| Coordinates | 60691..61266 (+) | Length | 191 a.a. |
| NCBI ID | WP_245043750.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe102 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 55691..66266
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG56_RS00240 (MPG56_00240) | uvrD | 56382..58427 (+) | 2046 | WP_245043746.1 | DNA helicase UvrD | - |
| MPG56_RS00245 (MPG56_00245) | flgA | 58424..59080 (+) | 657 | WP_050835222.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| MPG56_RS00250 (MPG56_00250) | - | 59090..59653 (+) | 564 | WP_000780125.1 | UbiX family flavin prenyltransferase | - |
| MPG56_RS00255 (MPG56_00255) | coaD | 59653..60126 (+) | 474 | WP_154508494.1 | pantetheine-phosphate adenylyltransferase | - |
| MPG56_RS00260 (MPG56_00260) | tmk | 60128..60703 (+) | 576 | WP_245043748.1 | dTMP kinase | - |
| MPG56_RS00265 (MPG56_00265) | comFC | 60691..61266 (+) | 576 | WP_245043750.1 | ComF family protein | Machinery gene |
| MPG56_RS00270 (MPG56_00270) | - | 61299..63338 (+) | 2040 | WP_245043752.1 | N-6 DNA methylase | - |
| MPG56_RS00275 (MPG56_00275) | - | 63335..63955 (+) | 621 | WP_245043754.1 | restriction endonuclease subunit S | - |
| MPG56_RS00280 (MPG56_00280) | - | 63930..64544 (+) | 615 | WP_245043756.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21311.88 Da Isoelectric Point: 8.8998
>NTDB_id=666473 MPG56_RS00265 WP_245043750.1 60691..61266(+) (comFC) [Helicobacter pylori strain Hpfe102]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNTISYAGKSLEFRANNPRDFTFKGDETLDYFLLDDII
TTGTTLKEALKHLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNTISYAGKSLEFRANNPRDFTFKGDETLDYFLLDDII
TTGTTLKEALKHLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=666473 MPG56_RS00265 WP_245043750.1 60691..61266(+) (comFC) [Helicobacter pylori strain Hpfe102]
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGCTTAAGGGCTACTAATACTATTTCGTATGCTGGGAAAAGCCTGG
AATTTCGTGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAACTTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAACACCTTAAAACCCTAAACATCAAAGCGCACTTTGCAATCGCGCTTTG
CAGCGCAGATGAATGA
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGCTTAAGGGCTACTAATACTATTTCGTATGCTGGGAAAAGCCTGG
AATTTCGTGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAACTTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAACACCTTAAAACCCTAAACATCAAAGCGCACTTTGCAATCGCGCTTTG
CAGCGCAGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.288 |
100 |
0.953 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |