Detailed information NTG0666454

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG31_RS00715
• Genome accession: NZ_CP094074
• Coordinates: 149843..150808 (+)
• Length: 321 a.a.
• NCBI ID: WP_245015363.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe103
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 144843..155808

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG31_RS00685 (MPG31_00685)	panD	146256..146606 (+)	351	WP_000142208.1	aspartate 1-decarboxylase	-
MPG31_RS00690 (MPG31_00690)	-	146617..146910 (+)	294	WP_245015362.1	YbaB/EbfC family nucleoid-associated protein	-
MPG31_RS00695 (MPG31_00695)	-	146910..147905 (+)	996	WP_245015690.1	PDZ domain-containing protein	-
MPG31_RS00700 (MPG31_00700)	comB6	147913..148968 (+)	1056	WP_245015691.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG31_RS00705 (MPG31_00705)	comB7	148984..149109 (+)	126	WP_180661107.1	comB7 lipoprotein	Machinery gene
MPG31_RS00710 (MPG31_00710)	comB8	149106..149843 (+)	738	WP_075708163.1	virB8 family protein	Machinery gene
MPG31_RS00715 (MPG31_00715)	comB9	149843..150808 (+)	966	WP_245015363.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG31_RS00720 (MPG31_00720)	comB10	150801..151937 (+)	1137	WP_245015364.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG31_RS00725 (MPG31_00725)	-	152007..153419 (+)	1413	WP_245015365.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG31_RS00730 (MPG31_00730)	gmd	153433..154578 (+)	1146	WP_001918970.1	GDP-mannose 4,6-dehydratase	-
MPG31_RS00735 (MPG31_00735)	-	154571..155503 (+)	933	WP_050827672.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 36867.36 Da
• Isoelectric Point: 9.2493

>NTDB_id=666454 MPG31_RS00715 WP_245015363.1 149843..150808(+) (comB9) [Helicobacter pylori strain Hpfe103]
MRKVLCALVGFLLAFSALKADDFLEEANETAPVNLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLLFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLENTPTNNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQRGYRALKSSQRKWYCLGICSKKS
KLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRSGKDYLCIRFIKKGKD
E

Nucleotide

• Length: 966 bp

>NTDB_id=666454 MPG31_RS00715 WP_245015363.1 149843..150808(+) (comB9) [Helicobacter pylori strain Hpfe103]
ATGCGTAAGGTTTTATGCGCTCTTGTGGGCTTTTTGCTAGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGTGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGCTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATTTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTGCAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAATACCCCCACAAACAACAACAAACCCTT
AAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAAACTATAACGATTGGTGATAACACTAATGCAATGAAAATCGTTAAAA
AAGACATTCAAAGAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCC
AAGCTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTC
CAAATTCCCGGTGATTTACAAAGTCGTTGATGGCTATGATAACCCAGTGAATACTAGGATTGTGGGCGATTACATTATCG
CTGAAGATGTGTCGGCTAAATGGACTTTAAGATCGGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	91.437	100	0.931