Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPF94_RS05555 Genome accession   NZ_CP094065
Coordinates   1160795..1161199 (-) Length   134 a.a.
NCBI ID   WP_075645903.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe112     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1155795..1166199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF94_RS05515 (MPF94_05515) - 1155970..1157061 (-) 1092 WP_245021868.1 hypothetical protein -
  MPF94_RS05520 (MPF94_05520) - 1157051..1157836 (-) 786 WP_245021869.1 hypothetical protein -
  MPF94_RS05525 (MPF94_05525) - 1157836..1158222 (-) 387 WP_245021870.1 DUF1294 domain-containing protein -
  MPF94_RS05530 (MPF94_05530) - 1158548..1158709 (-) 162 WP_229765080.1 lysozyme -
  MPF94_RS05535 (MPF94_05535) - 1158729..1159229 (-) 501 WP_245021871.1 glycoside hydrolase family protein -
  MPF94_RS05540 (MPF94_05540) - 1159240..1159800 (-) 561 WP_245021872.1 hypothetical protein -
  MPF94_RS05545 (MPF94_05545) - 1159784..1160122 (-) 339 WP_000699911.1 hypothetical protein -
  MPF94_RS05550 (MPF94_05550) - 1160310..1160672 (-) 363 WP_245022563.1 tetratricopeptide repeat protein -
  MPF94_RS05555 (MPF94_05555) dprB 1160795..1161199 (-) 405 WP_075645903.1 Holliday junction resolvase RuvX Machinery gene
  MPF94_RS05560 (MPF94_05560) dprA 1161196..1161996 (-) 801 WP_245021873.1 DNA-processing protein DprA Machinery gene
  MPF94_RS05565 (MPF94_05565) minE 1162008..1162241 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPF94_RS05570 (MPF94_05570) minD 1162238..1163044 (-) 807 WP_245021874.1 septum site-determining protein MinD -
  MPF94_RS05575 (MPF94_05575) ilvC 1163069..1164061 (-) 993 WP_245021875.1 ketol-acid reductoisomerase -
  MPF94_RS05585 (MPF94_05585) - 1164310..1165092 (+) 783 WP_245021876.1 NAD+ synthase -
  MPF94_RS05590 (MPF94_05590) - 1165089..1166027 (+) 939 WP_245021877.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15279.82 Da        Isoelectric Point: 9.5494

>NTDB_id=666335 MPF94_RS05555 WP_075645903.1 1160795..1161199(-) (dprB) [Helicobacter pylori strain Hpfe112]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666335 MPF94_RS05555 WP_075645903.1 1160795..1161199(-) (dprB) [Helicobacter pylori strain Hpfe112]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATCTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGAGAAAAAAACATTCAGGTGCTGGTGG
TGGGTAAGCCCAATGAAAGCTATGCGGACACGAATGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGTGCTTGTAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

97.727

98.507

0.963