Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | MPF94_RS00280 | Genome accession | NZ_CP094065 |
| Coordinates | 63856..64431 (+) | Length | 191 a.a. |
| NCBI ID | WP_245022155.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe112 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 58856..69431
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPF94_RS00255 (MPF94_00255) | uvrD | 59547..61592 (+) | 2046 | WP_245022151.1 | DNA helicase UvrD | - |
| MPF94_RS00260 (MPF94_00260) | flgA | 61589..62245 (+) | 657 | WP_245022152.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| MPF94_RS00265 (MPF94_00265) | - | 62255..62818 (+) | 564 | WP_000780124.1 | UbiX family flavin prenyltransferase | - |
| MPF94_RS00270 (MPF94_00270) | coaD | 62818..63291 (+) | 474 | WP_245022153.1 | pantetheine-phosphate adenylyltransferase | - |
| MPF94_RS00275 (MPF94_00275) | tmk | 63293..63868 (+) | 576 | WP_245022154.1 | dTMP kinase | - |
| MPF94_RS00280 (MPF94_00280) | comFC | 63856..64431 (+) | 576 | WP_245022155.1 | ComF family protein | Machinery gene |
| MPF94_RS00285 (MPF94_00285) | - | 64464..66503 (+) | 2040 | WP_245022156.1 | N-6 DNA methylase | - |
| MPF94_RS00290 (MPF94_00290) | - | 66500..67153 (+) | 654 | WP_245022157.1 | restriction endonuclease subunit S | - |
| MPF94_RS00295 (MPF94_00295) | - | 67180..67737 (+) | 558 | WP_245022158.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21239.81 Da Isoelectric Point: 9.0940
>NTDB_id=666324 MPF94_RS00280 WP_245022155.1 63856..64431(+) (comFC) [Helicobacter pylori strain Hpfe112]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSATLLKGFCQGNLKATYGRLRAANAVSYAGKSLEFRANNPRNFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSATLLKGFCQGNLKATYGRLRAANAVSYAGKSLEFRANNPRNFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=666324 MPF94_RS00280 WP_245022155.1 63856..64431(+) (comFC) [Helicobacter pylori strain Hpfe112]
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCACGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTGCTAATGCTGTTTCGTATGCTGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAAGTTTAGATTATTTCTTACTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCACGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTGCTAATGCTGTTTCGTATGCTGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAAGTTTAGATTATTTCTTACTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
96.335 |
100 |
0.963 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
35.938 |
100 |
0.361 |