Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | MPG12_RS00260 | Genome accession | NZ_CP094062 |
| Coordinates | 58494..59069 (+) | Length | 191 a.a. |
| NCBI ID | WP_245045906.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe118 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 53494..64069
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG12_RS00235 (MPG12_00235) | uvrD | 54185..56230 (+) | 2046 | WP_245045903.1 | DNA helicase UvrD | - |
| MPG12_RS00240 (MPG12_00240) | flgA | 56227..56883 (+) | 657 | WP_245045904.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| MPG12_RS00245 (MPG12_00245) | - | 56893..57456 (+) | 564 | WP_245045905.1 | UbiX family flavin prenyltransferase | - |
| MPG12_RS00250 (MPG12_00250) | coaD | 57456..57929 (+) | 474 | WP_121018285.1 | pantetheine-phosphate adenylyltransferase | - |
| MPG12_RS00255 (MPG12_00255) | tmk | 57931..58506 (+) | 576 | WP_180470387.1 | dTMP kinase | - |
| MPG12_RS00260 (MPG12_00260) | comFC | 58494..59069 (+) | 576 | WP_245045906.1 | ComF family protein | Machinery gene |
| MPG12_RS00265 (MPG12_00265) | - | 59102..61141 (+) | 2040 | WP_245045907.1 | N-6 DNA methylase | - |
| MPG12_RS00270 (MPG12_00270) | - | 61200..62381 (+) | 1182 | WP_245045908.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21355.93 Da Isoelectric Point: 8.8864
>NTDB_id=666257 MPG12_RS00260 WP_245045906.1 58494..59069(+) (comFC) [Helicobacter pylori strain Hpfe118]
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAVLLKGFCQGNLKPTYGRLRATNTISYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAVLLKGFCQGNLKPTYGRLRATNTISYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=666257 MPG12_RS00260 WP_245045906.1 58494..59069(+) (comFC) [Helicobacter pylori strain Hpfe118]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCCCAAAAAGCCGGTGCAGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGTGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCTACTTACGGGCGTTTAAGGGCGACTAATACTATTTCGTATGCTGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCACTTTGCAATCGCTCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCCCAAAAAGCCGGTGCAGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGTGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCTACTTACGGGCGTTTAAGGGCGACTAATACTATTTCGTATGCTGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCACTTTGCAATCGCTCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
94.241 |
100 |
0.942 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |