Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG58_RS07205 Genome accession   NZ_CP094061
Coordinates   1514803..1515084 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe120     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1509803..1520084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG58_RS07185 (MPG58_07185) - 1510515..1511945 (-) 1431 WP_162972184.1 COG3014 family protein -
  MPG58_RS07195 (MPG58_07195) comB4 1512175..1514538 (-) 2364 WP_245011742.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG58_RS07200 (MPG58_07200) comB3 1514540..1514803 (-) 264 WP_000584955.1 hypothetical protein Machinery gene
  MPG58_RS07205 (MPG58_07205) comB2 1514803..1515084 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG58_RS07210 (MPG58_07210) - 1515229..1516056 (-) 828 WP_245011743.1 DUF5718 family protein -
  MPG58_RS07215 (MPG58_07215) - 1516147..1517199 (-) 1053 WP_245011744.1 MnmA/TRMU family protein -
  MPG58_RS07220 (MPG58_07220) dnaG 1517196..1518875 (-) 1680 WP_245011745.1 DNA primase -
  MPG58_RS07225 (MPG58_07225) groES 1519150..1519506 (+) 357 WP_245011746.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=666255 MPG58_RS07205 WP_001272686.1 1514803..1515084(-) (comB2) [Helicobacter pylori strain Hpfe120]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=666255 MPG58_RS07205 WP_001272686.1 1514803..1515084(-) (comB2) [Helicobacter pylori strain Hpfe120]
ATGTCCGCTCATTTTTTAAAAATTATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989