Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG12_RS00010 Genome accession   NZ_CP094062
Coordinates   1588..3024 (+) Length   478 a.a.
NCBI ID   WP_245045859.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe118     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG12_RS00005 (MPG12_00005) dnaA 1..1368 (+) 1368 WP_154481712.1 chromosomal replication initiator protein DnaA -
  MPG12_RS00010 (MPG12_00010) comH 1588..3024 (+) 1437 WP_245045859.1 competence protein Machinery gene
  MPG12_RS00020 (MPG12_00020) - 3204..3956 (+) 753 WP_021308174.1 exodeoxyribonuclease III -
  MPG12_RS00025 (MPG12_00025) - 3953..4588 (-) 636 WP_000668030.1 outer membrane protein -
  MPG12_RS00030 (MPG12_00030) - 4592..4936 (-) 345 WP_017281682.1 hypothetical protein -
  MPG12_RS00035 (MPG12_00035) recG 5018..6889 (+) 1872 WP_245045861.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 478 a.a.        Molecular weight: 54802.69 Da        Isoelectric Point: 6.9188

>NTDB_id=666256 MPG12_RS00010 WP_245045859.1 1588..3024(+) (comH) [Helicobacter pylori strain Hpfe118]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKESHPHQMLSLNAPIQKPQNKPTSSQQSLQNFPYPESKLGFKNPKNSLLQPL
ATPNKISSANEVKTPTNDTKPPLKHSSEDQENNLFIAPPTEKTLPNNTPNANNEHNESNENRDNGEKQAIRDPNVKEFAC
GKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQARS
STEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQTEPTFYETSELAYSSTRKSEITHNELN
LNEKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSHVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1437 bp        

>NTDB_id=666256 MPG12_RS00010 WP_245045859.1 1588..3024(+) (comH) [Helicobacter pylori strain Hpfe118]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCACATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCTCCACACAAAAAACTCACGCTCACTATCACCCACATATCTACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATTCCCAGAAATACCCAAATTGTTTTTTCTTCAAAAGA
ATTAAAAGAGTCGCACCCACACCAAATGCTTTCCTTAAACGCACCCATACAAAAACCGCAAAACAAACCCACTTCATCGC
AACAATCTCTTCAAAACTTTCCTTACCCAGAGTCCAAACTAGGCTTTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTA
GCCACTCCTAATAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTATAGCACCACCCACTGAAAAAACGCTCCCTAACAACACTCCTAACGCTAATAATG
AACACAATGAAAGCAATGAAAATAGGGATAATGGAGAAAAACAAGCCATTAGAGATCCTAATGTCAAAGAATTTGCATGC
GGGAAGTGGGTCTATGATGATGAAAATTTACAAGCTTACCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACAGAC
TGCAACAGACATTACCCCTTGCGATTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAATCT
CTGTTCATAAAACAGAGCCTTTAGAAGAGCCACAAACCTTTGAAGCTAAAAACAATTTTACCATCCTCCAAGCCAGAAGC
TCTACAGAAAAATGCAAAAGGGCTAGAGCCAGAAAAGACGGCACGACTAGGCAATGCTATCTCATAGAAGAGCCTTTAAA
ACAAGCGTGGGAGAGCGAGTATGAAATCACCACGCAATTAGTGAAAGCCATTTATGAACGCCCCAAACAAGACGATCAAA
CAGAGCCGACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCACAACGAACTGAAT
TTGAATGAAAAATTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAATCAAAGAAAGCAGTGAATA
CAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAGCCA
AAAGCACGCCTTTGAGCATTGAAAATTCTCATGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

92.902

100

0.931