Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG39_RS05415 Genome accession   NZ_CP094059
Coordinates   1132624..1133028 (-) Length   134 a.a.
NCBI ID   WP_220958298.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe122     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1127624..1138028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG39_RS05375 (MPG39_05375) - 1127804..1128910 (-) 1107 WP_245080012.1 hypothetical protein -
  MPG39_RS05380 (MPG39_05380) - 1128900..1129685 (-) 786 WP_245080014.1 hypothetical protein -
  MPG39_RS05385 (MPG39_05385) - 1129685..1130071 (-) 387 WP_245080016.1 DUF1294 domain-containing protein -
  MPG39_RS05390 (MPG39_05390) - 1130376..1131032 (-) 657 WP_342369694.1 lysozyme -
  MPG39_RS05395 (MPG39_05395) - 1131061..1131621 (-) 561 WP_245080023.1 hypothetical protein -
  MPG39_RS05400 (MPG39_05400) - 1131605..1131943 (-) 339 WP_000699911.1 hypothetical protein -
  MPG39_RS05405 (MPG39_05405) - 1132133..1132228 (-) 96 WP_180534467.1 hypothetical protein -
  MPG39_RS05410 (MPG39_05410) - 1132359..1132565 (-) 207 WP_245080024.1 tetratricopeptide repeat protein -
  MPG39_RS05415 (MPG39_05415) dprB 1132624..1133028 (-) 405 WP_220958298.1 Holliday junction resolvase RuvX Machinery gene
  MPG39_RS05420 (MPG39_05420) dprA 1133025..1133825 (-) 801 WP_245080025.1 DNA-processing protein DprA Machinery gene
  MPG39_RS05425 (MPG39_05425) minE 1133837..1134070 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG39_RS05430 (MPG39_05430) minD 1134067..1134873 (-) 807 WP_220912539.1 septum site-determining protein MinD -
  MPG39_RS05435 (MPG39_05435) ilvC 1134897..1135889 (-) 993 WP_245081315.1 ketol-acid reductoisomerase -
  MPG39_RS05445 (MPG39_05445) - 1136137..1136919 (+) 783 WP_120878727.1 NAD+ synthase -
  MPG39_RS05450 (MPG39_05450) - 1136916..1137854 (+) 939 WP_245080026.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15194.67 Da        Isoelectric Point: 9.1725

>NTDB_id=666227 MPG39_RS05415 WP_220958298.1 1132624..1133028(-) (dprB) [Helicobacter pylori strain Hpfe122]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666227 MPG39_RS05415 WP_220958298.1 1132624..1133028(-) (dprB) [Helicobacter pylori strain Hpfe122]
GTGATTTTGGCATGCGATGTGGGCTTAAAACGCATTGGGATCGCTGCACTTTTAAACGGCGTTATTTTACCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAACTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAGGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGTGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.241

99.254

0.955